Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

10190215 .. 10197801

Gene Structure 7587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTCGTTCTCTCTTGTCTTTCATCCTTGCCTCCCTCCTAGCCCTAGCTACTCTGCATGGAACCCATGCAGTCGAGTTCGTCGTCTTTAACCGGGCTCTCAACACCTCTGGCGGAGTCCGCTTCAGAGACCAGCTAGGGAGGAACTACACCCAGCAAAGGATGAGCGCTGCCACAAATTTTATCTGGAACCTCTTTGAAGAAACTACAGCTGCGGAGAGAAAGAACGTGCCACGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGCGTATACCATCAACGATGAGATTCACGTCGGGGCTAAATACATACAGGATATAAAAGGCGACATCAAAACGGACTTCAATGGGGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCAGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGGTTGAAGGCCGACTATGTTCCTAATGGGTGGGTGAAACCGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTTACTGCACGATACCTAGACTACTGCAATGGGCTCAAGCAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAGACGGTTATAGTGACAATTTCTTTAGCCAATTGCTTGGGAAGACAGTTGATCAGCTGTGGAAAGACTACAAAGCTAAATTCGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

6.97

Isoelectric Point (pI)

17.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 221	4.7e-74	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	272
AciI	CCGC	4 cut(s)	114, 121, 215, 414
AcsI	RAATTY	2 cut(s)	178, 671
AcuI	CTGAAG	1 cut(s)	109
AcvI	CACGTG	1 cut(s)	379
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	159, 491
AflIII	ACRYGT	2 cut(s)	376, 378
AgsI	TTSAA	3 cut(s)	200, 349, 451
AjiI	CACGTC	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	379
AluBI	AGCT	7 cut(s)	50, 136, 212, 243, 407, 649, 668
AluI	AGCT	7 cut(s)	50, 136, 212, 243, 407, 649, 668
Alw26I	GTCTC	2 cut(s)	123, 588
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	170, 212
ApoI	RAATTY	2 cut(s)	178, 671
AseI	ATTAAT	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	95, 486
AsuHPI	GGTGA	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	100, 555
BauI	CACGAG	2 cut(s)	234, 365
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	157, 199
BccI	CCATC	2 cut(s)	257, 287
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	95, 486
BcoDI	GTCTC	2 cut(s)	123, 588
BfaI	CTAG	4 cut(s)	41, 47, 137, 536
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	2 cut(s)	171, 213
BlsI	GCNGC	2 cut(s)	172, 214
Bme1390I	CCNGG	2 cut(s)	95, 486
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	64, 191
BmrFI	CCNGG	2 cut(s)	95, 486
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	2 cut(s)	95, 486
BsaAI	YACGTR	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 491
Bse3DI	GCAATG	1 cut(s)	553
BseGI	GGATG	5 cut(s)	24, 168, 259, 268, 511
BseLI	CCNNNNNNNGG	2 cut(s)	159, 491
BseMI	GCAATG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	157, 199
BseYI	CCCAGC	2 cut(s)	153, 410
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	94, 485
BslI	CCNNNNNNNGG	2 cut(s)	159, 491
BsmAI	GTCTC	2 cut(s)	123, 588
BsmBI	CGTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	100, 555
Bsp143I	GATC	1 cut(s)	643
BspACI	CCGC	4 cut(s)	114, 121, 215, 414
BspANI	GGCC	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	64, 191
BspTNI	GGTCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	553
BssMI	GATC	1 cut(s)	643
BssNAI	GTATAC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	234, 365
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	2 cut(s)	234, 365
Bst4CI	ACNGT	3 cut(s)	395, 599, 640
BstBAI	YACGTR	1 cut(s)	379
BstF5I	GGATG	5 cut(s)	24, 168, 259, 268, 511
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	2 cut(s)	123, 588
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	93, 484
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	157, 199
BstV2I	GAAGAC	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	5 cut(s)	24, 168, 259, 268, 511
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	59, 68, 259
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	2 cut(s)	100, 555
Eco31I	GGTCTC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	100, 555
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	3 cut(s)	62, 71, 262
FaiI	YATR	8 cut(s)	60, 69, 260, 276, 314, 323, 462, 603
FatI	CATG	3 cut(s)	58, 67, 258
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	171, 213
FokI	GGATG	5 cut(s)	11, 175, 266, 275, 518
FriOI	GRGCYC	2 cut(s)	100, 555
Fsp4HI	GCNGC	2 cut(s)	171, 213
FspBI	CTAG	4 cut(s)	41, 47, 137, 536
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	171, 213
GsaI	CCCAGC	2 cut(s)	157, 414
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	2 cut(s)	94, 485
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	62, 71, 262
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	2 cut(s)	117, 292
HpaII	CCGG	2 cut(s)	94, 485
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	187, 676
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	86, 302
HpyAV	CCTTC	2 cut(s)	419, 445
HpyCH4III	ACNGT	3 cut(s)	395, 599, 640
HpyCH4IV	ACGT	3 cut(s)	228, 297, 378
HpyCH4V	TGCA	5 cut(s)	58, 71, 434, 527, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	3 cut(s)	228, 297, 378
Hsp92II	CATG	3 cut(s)	62, 71, 262
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	96, 107, 146, 167, 172, 302, 424, 498
Lsp1109I	GCAGC	2 cut(s)	157, 199
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	4 cut(s)	41, 47, 137, 536
MaeII	ACGT	3 cut(s)	228, 297, 378
MaeIII	GTNAC	2 cut(s)	520, 605
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	3 cut(s)	212, 598, 646
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	100, 555
MluCI	AATT	5 cut(s)	178, 429, 610, 623, 671
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	43, 47, 118, 135, 203, 438, 484, 502
MseI	TTAA	3 cut(s)	90, 419, 579
MslI	CAYNNNNRTG	1 cut(s)	379
MspA1I	CMGCKG	3 cut(s)	212, 414, 649
MspI	CCGG	2 cut(s)	94, 485
MspR9I	CCNGG	2 cut(s)	95, 486
MunI	CAATTG	1 cut(s)	623
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	95, 486
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	3 cut(s)	62, 71, 262
NlaIV	GGNNCC	2 cut(s)	64, 191
NmuCI	GTSAC	1 cut(s)	605
OliI	CACNNNNGTG	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	172, 214
PleI	GAGTC	1 cut(s)	125
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	419
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	153, 410
PspN4I	GGNNCC	2 cut(s)	64, 191
PvuII	CAGCTG	2 cut(s)	212, 649
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	90, 419, 579
SatI	GCNGC	2 cut(s)	171, 213
Sau3AI	GATC	1 cut(s)	643
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	95, 486
SduI	GDGCHC	2 cut(s)	100, 555
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	5 cut(s)	178, 429, 610, 623, 671
SsiI	CCGC	4 cut(s)	114, 121, 215, 414
SspMI	CTAG	4 cut(s)	41, 47, 137, 536
StyD4I	CCNGG	2 cut(s)	93, 484
TaaI	ACNGT	3 cut(s)	395, 599, 640
TaiI	ACGT	3 cut(s)	231, 300, 381
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	178, 429, 610, 623, 671
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	3 cut(s)	90, 419, 579
Tru9I	TTAA	3 cut(s)	90, 419, 579
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	170, 212
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	2 cut(s)	178, 671
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	4 cut(s)	41, 47, 137, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.