Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

9701479 .. 9701880

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTCGCTTTCTCCTTTCATTTGTCTTTGCTTCTCTCTTAGCCCTAGCTACTGTCCATGAAACTCAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAGCACCCCTGGTGGAGTCCGTTTTAGAGACGAGCTGGGCTTGGACTACACCAAGCAAAGAATGAGAGACGCGACTGATTTCATCTGGAACCTCTTTAAGGAAACTACAGCTGCAGAGAGAAGGGACAAGCCACGCATAAGCTTGTTCGTCGAAGACAGAGAAGGCATTGCGGTTTCGAGCGGTGACATTATTCATGTTTCAGCCAAGTACATCCAGGTAAATATATACATGGTCAAGATTTTCAATATTTTACATTTTTTTTTTCCTTTGATATTTCTTTTGACTAATATATACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

133

Amino Acids

15.41

Weight (kDa)

6.83

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 107	1.7e-15	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	282
AccII	CGCG	1 cut(s)	173
AciI	CCGC	2 cut(s)	272, 282
AfaI	GTAC	2 cut(s)	80, 311
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	109, 315
AluBI	AGCT	5 cut(s)	50, 71, 136, 212, 243
AluI	AGCT	5 cut(s)	50, 71, 136, 212, 243
Alw26I	GTCTC	2 cut(s)	123, 162
ApeKI	GCWGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	111, 317
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	123, 162
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	207, 213
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	95, 111, 317
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	3 cut(s)	95, 111, 317
BpiI	GAAGAC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	111, 317
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	272, 282
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	111, 317
Bst4CI	ACNGT	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	40, 101
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	123, 162
BstNI	CCWGG	2 cut(s)	111, 317
BstSCI	CCNGG	3 cut(s)	93, 109, 315
BstSFI	CTRYAG	2 cut(s)	207, 213
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	79, 310
CviAII	CATG	3 cut(s)	59, 296, 331
CviQI	GTAC	2 cut(s)	79, 310
DdeI	CTNAG	2 cut(s)	40, 101
Eco24I	GRGCYC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	109, 315
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	3 cut(s)	62, 299, 334
FaiI	YATR	9 cut(s)	60, 239, 297, 326, 328, 332, 392, 394, 400
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	58, 295, 330
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	140
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	62, 299, 334
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	296
Hpy188III	TCNNGA	3 cut(s)	88, 187, 337
Hpy99I	CGWCG	2 cut(s)	89, 254
HpyAV	CCTTC	2 cut(s)	216, 257
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	40, 101
Hsp92II	CATG	3 cut(s)	62, 299, 334
LpnPI	CCDG	7 cut(s)	96, 107, 122, 123, 172, 302, 329
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	3 cut(s)	95, 111, 317
MvaI	CCWGG	2 cut(s)	111, 317
MvnI	CGCG	1 cut(s)	173
NciI	CCSGG	1 cut(s)	95
NlaIII	CATG	3 cut(s)	62, 299, 334
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	109, 315
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	109, 315
PspN4I	GGNNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	80, 311
RsaNI	GTAC	2 cut(s)	79, 310
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	95, 111, 317
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	52, 73, 138, 195, 214, 245, 321
SfcI	CTRYAG	2 cut(s)	207, 213
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SsiI	CCGC	2 cut(s)	272, 282
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	93, 109, 315
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	87, 252, 278
TatI	WGTACW	2 cut(s)	78, 309
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	9, 75, 172, 284
TspGWI	ACGGA	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.