Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

7492828 .. 7493052

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGTACCGCTACAAACTTCATTTGGAACCTCTTTAAGCAAACCTTATCTCCTTCAGAGAGAAAGAATGTGCAGCTCGTAACCTTGATCGTAGAAAACATAGGTGGTGTTGCATATACAAGCAATAACGAGATCCATTTTCGTGCTCAATACAACCAGGTATGCCACAAAATTTCTGACGTGACATCCTCTGTAAATGAAATTCTTTGCTATTTCTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

6.7

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	171, 201
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	171, 201
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	87, 132
BspACI	CCGC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	127
BssMI	GATC	2 cut(s)	87, 132
Bst2UI	CCWGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	2 cut(s)	90, 135
BstMBI	GATC	2 cut(s)	87, 132
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	1 cut(s)	76
CviKI_1	RGCY	1 cut(s)	76
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	89, 134
DpnII	GATC	2 cut(s)	87, 132
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	156
FaiI	YATR	4 cut(s)	101, 115, 117, 163
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	58, 178
HpyAV	CCTTC	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	73, 113
HpySE526I	ACGT	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	87, 132
LpnPI	CCDG	2 cut(s)	143, 170
Lsp1109I	GCAGC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	156
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	79, 181
MalI	GATC	2 cut(s)	89, 134
MboI	GATC	2 cut(s)	87, 132
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	171, 201
MnlI	CCTC	2 cut(s)	41, 199
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	87, 132
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	87, 132
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	7 cut(s)	33, 47, 78, 86, 106, 162, 183
SexAI	ACCWGGT	1 cut(s)	156
SgeI	CNNG	8 cut(s)	89, 97, 132, 142, 155, 169, 170, 193
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	171, 201
SsiI	CCGC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	171, 201
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	10, 213
XapI	RAATTY	2 cut(s)	171, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.