Rw6G006300

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001463
Physical Location & Seq
Forward (+)
9966308 .. 9967390
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006300.1

Sequence Viewer

Length: 687 bp
ATGGCTCGCTTTCTCCTTTCATTGGTCTTTGCTTCTCTCTTAGCCCTAGCTACTGTCCATGAAACACAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAGCACCCCTGGCGGAGTCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCGACTGAATTCATTTGGAACCTCTTTAAGCAAACTACAGCTGCAGAAAGAAGGAACACTCCGCGCATAAGCTTGTTCGTCGAAGATAGAGAAGGCATTGCAGTCTCCAGCAATGACATTATTCATGTTTCAGCCAAGTACATCGAGGACCTATCGGCAGCAAACCTCAAAAACGACTTCAATTGGGTACTTTACCATGAGATCACACACTCATTGCAGTGGAATGGAAACGGTCAAACTCCTACCGGAGTGGTAGAAGGGATTGCTGAGTTTGTGACCTTGAAGTCTGGTTTTATACCCGCCTCGTTTGCAAAACCCGGTGATGGTACCAGTTGGGACGAGGGTTACAGCGAAACTGCACGGTTCCTGGATTATTGCAATGGCCTTAAAGACGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAGATGGTTACAGTAACGATTTCTTTAATCAGTTGCTCGGGAAGACGGTCGAACAGCTGTGGACCGACTACAAAGCCAAATATGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

228

Amino Acids

25.77

Weight (kDa)

5.3

Isoelectric Point (pI)

21.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 24 - 222 2.4e-64 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AccII CGCG 2 cut(s) 173, 235
AciI CCGC 3 cut(s) 114, 233, 471
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 4 cut(s) 80, 311, 360, 499
AfiI CCNNNNNNNGG 2 cut(s) 22, 494
AgsI TTSAA 2 cut(s) 352, 454
AjnI CCWGG 2 cut(s) 109, 537
AluBI AGCT 6 cut(s) 50, 71, 136, 212, 243, 652
AluI AGCT 6 cut(s) 50, 71, 136, 212, 243, 652
Alw26I GTCTC 3 cut(s) 123, 162, 280
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 212, 329
ApoI RAATTY 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 319, 657
AsuC2I CCSGG 2 cut(s) 95, 489
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 319, 657
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 644
BbvI GCAGC 2 cut(s) 199, 341
BccI CCATC 2 cut(s) 488, 593
BciT130I CCWGG 2 cut(s) 111, 539
BcnI CCSGG 2 cut(s) 95, 489
BcoDI GTCTC 3 cut(s) 123, 162, 280
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 207, 213
BisI GCNGC 2 cut(s) 213, 330
BlsI GCNGC 2 cut(s) 214, 331
Bme1390I CCNGG 4 cut(s) 95, 111, 489, 539
Bme18I GGWCC 2 cut(s) 319, 657
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 319, 657
BmiI GGNNCC 3 cut(s) 191, 499, 536
BmrFI CCNGG 4 cut(s) 95, 111, 489, 539
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 2 cut(s) 95, 489
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 494
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 4 cut(s) 267, 289, 383, 556
BseBI CCWGG 2 cut(s) 111, 539
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 22, 494
BseMI GCAATG 4 cut(s) 267, 289, 383, 556
BseMII CTCAG 2 cut(s) 115, 429
BseNI ACTGG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 199, 341
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 2 cut(s) 173, 235
Bsh1285I CGRYCG 1 cut(s) 645
BshFI GGCC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 3 cut(s) 94, 417, 489
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 22, 494
BsmAI GTCTC 3 cut(s) 123, 162, 280
BsmBI CGTCTC 2 cut(s) 123, 162
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 3 cut(s) 114, 233, 471
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 114, 430
BspFNI CGCG 2 cut(s) 173, 235
BspLI GGNNCC 3 cut(s) 191, 499, 536
BspMAI CTGCAG 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 4 cut(s) 267, 289, 383, 556
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 111, 539
Bst4CI ACNGT 5 cut(s) 55, 404, 534, 608, 643
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 40, 101, 438
BstFNI CGCG 2 cut(s) 173, 235
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 3 cut(s) 123, 162, 280
BstMBI GATC 1 cut(s) 372
BstMCI CGRYCG 1 cut(s) 645
BstMWI GCNNNNNNNGC 3 cut(s) 111, 479, 677
BstNI CCWGG 2 cut(s) 111, 539
BstSCI CCNGG 4 cut(s) 93, 109, 487, 537
BstSFI CTRYAG 2 cut(s) 207, 213
BstUI CGCG 2 cut(s) 173, 235
BstV1I GCAGC 2 cut(s) 199, 341
BstV2I GAAGAC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 555
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 319, 657
CseI GACGC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 79, 310, 359, 498
CviAII CATG 3 cut(s) 59, 296, 368
CviQI GTAC 4 cut(s) 79, 310, 359, 498
DdeI CTNAG 3 cut(s) 40, 101, 438
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 319, 657
Eco88I CYCGRG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 109, 537
EcoT38I GRGCYC 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 123, 162
FaeI CATG 3 cut(s) 62, 299, 371
FaiI YATR 6 cut(s) 60, 239, 297, 369, 467, 678
FaqI GGGAC 1 cut(s) 521
FatI CATG 3 cut(s) 58, 295, 367
FauI CCCGC 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 213, 330
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 213, 330
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 236
GluI GCNGC 2 cut(s) 213, 330
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 555
HapII CCGG 3 cut(s) 94, 417, 489
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 62, 299, 371
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 1 cut(s) 117
HpaII CCGG 3 cut(s) 94, 417, 489
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 2 cut(s) 145, 657
Hpy188III TCNNGA 2 cut(s) 88, 634
Hpy8I GTNNAC 2 cut(s) 145, 657
Hpy99I CGWCG 2 cut(s) 89, 254
HpyAV CCTTC 3 cut(s) 216, 257, 422
HpyCH4III ACNGT 5 cut(s) 55, 404, 534, 608, 643
HpyCH4V TGCA 7 cut(s) 215, 272, 388, 482, 530, 549, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 479, 677
HpyF3I CTNAG 3 cut(s) 40, 101, 438
Hsp92II CATG 3 cut(s) 62, 299, 371
HspAI GCGC 1 cut(s) 235
KpnI GGTACC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 372
Lsp1109I GCAGC 2 cut(s) 199, 341
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 4 cut(s) 445, 515, 602, 608
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 3 cut(s) 266, 601, 649
MfeI CAATTG 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 2 cut(s) 179, 352
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 5 cut(s) 203, 310, 347, 484, 505
MseI TTAA 4 cut(s) 198, 558, 582, 621
MslI CAYNNNNRTG 1 cut(s) 388
MspA1I CMGCKG 2 cut(s) 212, 652
MspI CCGG 3 cut(s) 94, 417, 489
MspR9I CCNGG 4 cut(s) 95, 111, 489, 539
MunI CAATTG 1 cut(s) 352
MvaI CCWGG 2 cut(s) 111, 539
MvnI CGCG 2 cut(s) 173, 235
MwoI GCNNNNNNNGC 3 cut(s) 111, 479, 677
NciI CCSGG 2 cut(s) 95, 489
NdeII GATC 1 cut(s) 372
NlaIII CATG 3 cut(s) 62, 299, 371
NlaIV GGNNCC 3 cut(s) 191, 499, 536
NmuCI GTSAC 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 2 cut(s) 214, 331
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 109, 537
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 109, 537
PspN4I GGNNCC 3 cut(s) 191, 499, 536
PspPI GGNCC 2 cut(s) 319, 657
PspPPI RGGWCCY 1 cut(s) 319
PstI CTGCAG 1 cut(s) 217
PvuII CAGCTG 2 cut(s) 212, 652
RsaI GTAC 4 cut(s) 80, 311, 360, 499
RsaNI GTAC 4 cut(s) 79, 310, 359, 498
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 4 cut(s) 198, 558, 582, 621
SatI GCNGC 2 cut(s) 213, 330
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 2 cut(s) 319, 657
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 4 cut(s) 95, 111, 489, 539
SduI GDGCHC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 207, 213
SinI GGWCC 2 cut(s) 319, 657
SmiMI CAYNNNNRTG 1 cut(s) 388
Sse9I AATT 2 cut(s) 179, 352
SsiI CCGC 3 cut(s) 114, 233, 471
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 93, 109, 487, 537
TaaI ACNGT 5 cut(s) 55, 404, 534, 608, 643
TaqI TCGA 4 cut(s) 87, 252, 315, 645
TaqII GACCGA 1 cut(s) 674
TasI AATT 2 cut(s) 179, 352
TatI WGTACW 2 cut(s) 78, 309
Tru1I TTAA 4 cut(s) 198, 558, 582, 621
Tru9I TTAA 4 cut(s) 198, 558, 582, 621
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 212, 329
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 9, 75, 172, 284
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 319, 657
XapI RAATTY 1 cut(s) 179
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.