FvH4_2g05120

RNA pseudouridine synthase 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
4182769 .. 4186942
4174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05120.t2

Sequence Viewer

Length: 1431 bp
ATGCCGAACCGCCTTCTCCTCCGCCGCATCCTCCTCCGTCCTCCACTCTCCTCCTCCTCCGCCGAATCAGCCGTCGATAGAATCTTCCACACTTTCCGATCTTACTCCACCACCCAAACAGTTCACGAAGACAAACAAAAGCGCGGCAACAAGTGGTTCACTCTACCGCCGTTCACTGACACCGTAAACGGCGCCGCTTTGGGCAGAGAGCTCTCTCGCAGCGTCGGCAGAGACGTGTACGCTAAACCCTCCGCCGCCGCAGCCACGACGGCGCTTAAATGGGTCACCAGGTGCTGCCCGGAGATTCCCAGAAACCTTGTGCAGAAGCTCTTTCGGTTAAGACAGGTTCGAAGAGAAGCATCTGACATGGATCAGAGTGTTCAACCACTTAAAAGGGTGGGGACTAAAGACTCAATGAACTTAGGAGATCGAATTTGTCTTCCTATTTCTGTGAAAGAGTTCCCTGATCATAAGCAAAAAGAGGGGCATTGTAGTGAGGAAGAAGCCGAGTTTATTCGTAGCCTTGTGTTGTACAAGGATCCGGCTATTATTGTCATCAATAAACCCCCTGGATTGCCTGTTCAGGGTGGTATCGGAATCAAAAGGAGTTTAGATGAACTGGCTGCCACTTGTTTAAGTTATGACTTATCACAACCTCCTCGTCTGGTACACAGACTTGACAGAGATTGTAGCGGTATCCTTGTGATGGGACGGACACAAACAAGTGCAACAGTTTTGCATTCAGTCTTCCGTGAGAAAACTTTTGGAGCTTCAGATGATGTTATCAAACATGCTAAAAGCATTCTGCAAAGAAGATATTTGGCACTCGTCATTGGATCTCCCAGACAACAAGAGGGATTAATCTCAGTGCCTTTAGGAAAGGTGGTGGTTGACAATGGTAAATCAGATAGGATCACCATTTTGAATAAAGCACAATGTTTGCCGTCTCAACATGCAATCACAAAGTACAAAGTGATTGGATCATCATGTCCTGGTTTCACATGGTTAGAGCTGATTCCACTTACCGGTCGAAAGCACCAGCTGCGGGTGCACTGTGCGGAAGTTTTGGGAACACCAATAGTCGGAGACTACAAATATGGATGGCGAACACATAAGGACTGGAAACCTGTTGCTTGGTCTAAGACTGAATGTCATTCCAATGAGGAGCGTTCAAAAAGAAAAAATCTTCCTTTTGATCTCAATATGGACAGTGGAAGTATCGACGAAAAGAATCTGCGCTTACATCTTCATTCTAAGCAAATGGTTTTGCCGAATGTGTCTCTGGCTTTGCAAAATGTGAAACTGCATGCGGAGTGTGATCTTTCAGGGCTAGAAAGCATAGAGTTGGTTGCTCCTATGCCTTCATACATGCAAAAAAGTTGGGATATTACAAATTCTTGTTTTGACAGGGGTGATATCACACATTCTTAA

Protein Analysis

477

Amino Acids

53.48

Weight (kDa)

9.44

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_2 PF00849 183 - 328 3.4e-13 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 144
AclWI GGATC 6 cut(s) 378, 533, 546, 844, 920, 988
AcsI RAATTY 2 cut(s) 432, 1393
AcuI CTGAAG 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 4 cut(s) 239, 533, 669, 968
AfiI CCNNNNNNNGG 5 cut(s) 584, 706, 1025, 1045, 1082
AflIII ACRYGT 1 cut(s) 234
AgeI ACCGGT 1 cut(s) 1025
AgsI TTSAA 3 cut(s) 383, 925, 1173
AhdI GACNNNNNGTC 1 cut(s) 1149
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 287, 568, 991
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 5 cut(s) 211, 328, 770, 1012, 1042
AluI AGCT 5 cut(s) 211, 328, 770, 1012, 1042
Alw21I GWGCWC 2 cut(s) 213, 1053
Alw26I GTCTC 4 cut(s) 225, 951, 1080, 1284
Alw44I GTGCAC 1 cut(s) 1049
AlwI GGATC 6 cut(s) 378, 533, 546, 844, 920, 988
AlwNI CAGNNNCTG 1 cut(s) 294
ApaLI GTGCAC 1 cut(s) 1049
ApeKI GCWGC 5 cut(s) 219, 260, 294, 623, 1042
ApoI RAATTY 2 cut(s) 432, 1393
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AseI ATTAAT 1 cut(s) 860
AsiGI ACCGGT 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 4 cut(s) 144, 194, 274, 1239
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 277, 907, 1424
AsuII TTCGAA 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 1053
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 3 cut(s) 135, 431, 739
Bbv12I GWGCWC 2 cut(s) 213, 1053
BbvI GCAGC 5 cut(s) 231, 272, 281, 610, 1029
BccI CCATC 2 cut(s) 700, 1095
BceAI ACGGC 5 cut(s) 56, 154, 205, 285, 928
BciT130I CCWGG 3 cut(s) 289, 570, 993
BciVI GTATCC 1 cut(s) 707
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 4 cut(s) 225, 951, 1080, 1284
BfaI CTAG 1 cut(s) 1331
BfoI RGCGCY 2 cut(s) 195, 275
BfuI GTATCC 1 cut(s) 707
BglI GCCNNNNNGGC 1 cut(s) 269
Bme1390I CCNGG 4 cut(s) 289, 299, 570, 993
BmeRI GACNNNNNGTC 1 cut(s) 1149
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 193, 540
BmrFI CCNGG 4 cut(s) 289, 299, 570, 993
BmsI GCATC 2 cut(s) 36, 368
BpiI GAAGAC 3 cut(s) 135, 431, 739
Bpu14I TTCGAA 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 5 cut(s) 584, 706, 1025, 1045, 1082
Bse118I RCCGGY 1 cut(s) 1025
Bse1I ACTGG 2 cut(s) 624, 1124
BseBI CCWGG 3 cut(s) 289, 570, 993
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 2 cut(s) 27, 1106
BseLI CCNNNNNNNGG 5 cut(s) 584, 706, 1025, 1045, 1082
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 2 cut(s) 624, 1124
BseRI GAGGAG 7 cut(s) 8, 23, 40, 43, 46, 648, 1178
BseSI GKGCMC 1 cut(s) 1053
BseXI GCAGC 5 cut(s) 231, 272, 281, 610, 1029
BsgI GTGCAG 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 1030
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 1025
BsiEI CGRYCG 1 cut(s) 1030
BsiHKAI GWGCWC 2 cut(s) 213, 1053
BsiSI CCGG 3 cut(s) 299, 542, 1026
BslFI GGGAC 2 cut(s) 415, 723
BslI CCNNNNNNNGG 5 cut(s) 584, 706, 1025, 1045, 1082
BsmAI GTCTC 4 cut(s) 225, 951, 1080, 1284
BsmBI CGTCTC 2 cut(s) 225, 951
BsmFI GGGAC 2 cut(s) 415, 723
BsmI GAATGC 2 cut(s) 739, 801
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 213, 1053
Bsp1407I TGTACA 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 878
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 193, 540
BspPI GGATC 6 cut(s) 378, 533, 546, 844, 920, 988
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 1025
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 2 cut(s) 624, 1124
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 289, 570, 993
Bst4CI ACNGT 5 cut(s) 121, 184, 733, 1055, 1211
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 1308
BstDEI CTNAG 4 cut(s) 421, 865, 1140, 1254
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 2 cut(s) 27, 1106
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 2 cut(s) 195, 275
BstHHI GCGC 4 cut(s) 144, 194, 274, 1239
BstMAI GTCTC 4 cut(s) 225, 951, 1080, 1284
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 6 cut(s) 68, 225, 260, 269, 1042, 1048
BstNI CCWGG 3 cut(s) 289, 570, 993
BstNSI RCATGY 4 cut(s) 794, 956, 1310, 1372
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 4 cut(s) 287, 297, 568, 991
BstSLI GKGCMC 1 cut(s) 1053
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 5 cut(s) 231, 272, 281, 610, 1029
BstV2I GAAGAC 3 cut(s) 135, 431, 739
BstX2I RGATCY 2 cut(s) 538, 836
BstYI RGATCY 2 cut(s) 538, 836
BsuI GTATCC 1 cut(s) 707
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 27, 1106
BtsIMutI CAGTG 4 cut(s) 174, 873, 1051, 1216
Cac8I GCNNGC 1 cut(s) 1308
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 4 cut(s) 144, 194, 274, 1239
Cfr10I RCCGGY 1 cut(s) 1025
CseI GACGC 1 cut(s) 211
CsiI ACCWGGT 1 cut(s) 287
Csp6I GTAC 4 cut(s) 238, 532, 668, 967
CspAI ACCGGT 1 cut(s) 1025
CviAII CATG 7 cut(s) 367, 791, 953, 987, 1002, 1307, 1369
CviQI GTAC 4 cut(s) 238, 532, 668, 967
DdeI CTNAG 4 cut(s) 421, 865, 1140, 1254
DinI GGCGCC 1 cut(s) 193
DraIII CACNNNGTG 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 1149
Eam1104I CTCTTC 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 1149
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 3 cut(s) 11, 49, 241
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 1417
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 756
Eco91I GGTNACC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 287, 568, 991
EcoRV GATATC 1 cut(s) 1417
EcoT38I GRGCYC 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
Esp3I CGTCTC 2 cut(s) 225, 951
FaeI CATG 7 cut(s) 370, 794, 956, 990, 1005, 1310, 1372
FaqI GGGAC 2 cut(s) 415, 723
FatI CATG 7 cut(s) 366, 790, 952, 986, 1001, 1306, 1368
FauI CCCGC 1 cut(s) 1038
FbaI TGATCA 1 cut(s) 466
FokI GGATG 2 cut(s) 14, 1113
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 1 cut(s) 1331
GlaI GCGC 4 cut(s) 143, 193, 273, 1238
HaeII RGCGCY 2 cut(s) 195, 275
HapII CCGG 3 cut(s) 299, 542, 1026
HgaI GACGC 1 cut(s) 211
HhaI GCGC 4 cut(s) 144, 194, 274, 1239
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 7 cut(s) 370, 794, 956, 990, 1005, 1310, 1372
Hin6I GCGC 4 cut(s) 142, 192, 272, 1237
HinP1I GCGC 4 cut(s) 142, 192, 272, 1237
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 7 cut(s) 65, 81, 304, 410, 597, 1015, 1231
HpaII CCGG 3 cut(s) 299, 542, 1026
HphI GGTGA 3 cut(s) 277, 907, 1424
Hpy166II GTNNAC 8 cut(s) 124, 159, 174, 187, 238, 670, 892, 1051
Hpy188I TCNGA 7 cut(s) 98, 364, 375, 596, 775, 907, 1085
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 8 cut(s) 124, 159, 174, 187, 238, 670, 892, 1051
Hpy99I CGWCG 4 cut(s) 77, 227, 271, 1226
HpyAV CCTTC 2 cut(s) 23, 1371
HpyCH4III ACNGT 5 cut(s) 121, 184, 733, 1055, 1211
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 9 cut(s) 322, 728, 739, 808, 956, 1051, 1291, 1306, 1372
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 225, 260, 269, 1042, 1048
HpyF3I CTNAG 4 cut(s) 421, 865, 1140, 1254
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 7 cut(s) 370, 794, 956, 990, 1005, 1310, 1372
HspAI GCGC 4 cut(s) 142, 192, 272, 1237
KasI GGCGCC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 466
LmnI GCTCC 3 cut(s) 767, 1165, 1357
Lsp1109I GCAGC 5 cut(s) 231, 272, 281, 610, 1029
LweI GCATC 2 cut(s) 36, 368
MabI ACCWGGT 1 cut(s) 287
MaeI CTAG 1 cut(s) 1331
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 9 cut(s) 76, 140, 363, 431, 512, 739, 825, 1178, 1238
MflI RGATCY 2 cut(s) 538, 836
MhlI GDGCHC 2 cut(s) 213, 1053
MluCI AATT 2 cut(s) 432, 1393
Mly113I GGCGCC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 1063
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 6 cut(s) 276, 338, 390, 635, 860, 1429
MslI CAYNNNNRTG 2 cut(s) 492, 1158
MspA1I CMGCKG 1 cut(s) 1042
MspI CCGG 3 cut(s) 299, 542, 1026
MspR9I CCNGG 4 cut(s) 289, 299, 570, 993
Mva1269I GAATGC 2 cut(s) 739, 801
MvaI CCWGG 3 cut(s) 289, 570, 993
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 6 cut(s) 68, 225, 260, 269, 1042, 1048
NarI GGCGCC 1 cut(s) 192
NciI CCSGG 1 cut(s) 299
NlaIII CATG 7 cut(s) 370, 794, 956, 990, 1005, 1310, 1372
NlaIV GGNNCC 2 cut(s) 193, 540
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 4 cut(s) 794, 956, 1310, 1372
NspV TTCGAA 1 cut(s) 349
PaeI GCATGC 1 cut(s) 1310
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 2 cut(s) 739, 801
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 6 cut(s) 65, 81, 304, 597, 1015, 1231
PinAI ACCGGT 1 cut(s) 1025
PleI GAGTC 1 cut(s) 404
PluTI GGCGCC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 287, 568, 991
PspEI GGTNACC 1 cut(s) 283
PspGI CCWGG 3 cut(s) 287, 568, 991
PspN4I GGNNCC 2 cut(s) 193, 540
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 2 cut(s) 538, 836
PvuII CAGCTG 1 cut(s) 1042
RsaI GTAC 4 cut(s) 239, 533, 669, 968
RsaNI GTAC 4 cut(s) 238, 532, 668, 967
RseI CAYNNNNRTG 2 cut(s) 492, 1158
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 6 cut(s) 276, 338, 390, 635, 860, 1429
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 4 cut(s) 289, 299, 570, 993
SduI GDGCHC 2 cut(s) 213, 1053
SexAI ACCWGGT 1 cut(s) 287
SfaNI GCATC 2 cut(s) 36, 368
SfoI GGCGCC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 492, 1158
SphI GCATGC 1 cut(s) 1310
Sse9I AATT 2 cut(s) 432, 1393
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 1 cut(s) 1331
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 4 cut(s) 287, 297, 568, 991
TaaI ACNGT 5 cut(s) 121, 184, 733, 1055, 1211
TaiI ACGT 1 cut(s) 237
TaqI TCGA 5 cut(s) 75, 349, 430, 1030, 1221
TasI AATT 2 cut(s) 432, 1393
TatI WGTACW 2 cut(s) 531, 966
TauI GCSGC 5 cut(s) 27, 147, 197, 257, 260
TfiI GAWTC 6 cut(s) 65, 81, 304, 597, 1015, 1231
Tru1I TTAA 6 cut(s) 276, 338, 390, 635, 860, 1429
Tru9I TTAA 6 cut(s) 276, 338, 390, 635, 860, 1429
TscAI CASTG 4 cut(s) 181, 873, 1058, 1216
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 5 cut(s) 219, 260, 294, 623, 1042
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 431, 630, 1238, 1353
TspGWI ACGGA 3 cut(s) 26, 727, 740
TspRI CASTG 4 cut(s) 181, 873, 1058, 1216
VneI GTGCAC 1 cut(s) 1049
VspI ATTAAT 1 cut(s) 860
XapI RAATTY 2 cut(s) 432, 1393
XceI RCATGY 4 cut(s) 794, 956, 1310, 1372
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.