Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

13902164 .. 13905441

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACTTAGAAGATCGAATATGTCTTCCTATTTCTGTGAAAGAGTTCCCTGATGACAAACAAGAAGAGGGACATTATAGTGAAGAAGAAGTCAAGTTTATTTGTAGCCTTGTGCTGTATAAGACCAATTACCTGCATTCACAATATCAAATATTAAAGAATCTCCCCATGCTAATGTTTTTCTTCTGGACAACTTCTTGTGTTTATGTTGGTGTAGAAGAGGACGGAAGCACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTCAAAGGATGATCTTGGGTATGTTTGCCGCATTTGTGGGGTTATTGATAGAGGAATTGATACAGTATTTGAGTTTCAGTATAACAAGGTTATAATTAGTAGTGGATTGGTTGCCGGAAGAGCCACAGGCAAAGGTGATGTCATCGATCAGAGTGTAGCTAGCGTTGATGACGATCCAGCCAGGAGTAGGGTTACGATGTGTAGAAAGAAGGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

170

Amino Acids

19.1

Weight (kDa)

4.54

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
AlwI	GGATC	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	17
BccI	CCATC	2 cut(s)	239, 259
BciT130I	CCWGG	1 cut(s)	472
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	435
BseGI	GGATG	2 cut(s)	270, 304
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	477
BshVI	ATCGAT	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	13, 301, 436, 463
BspACI	CCGC	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	141
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	458
BspQI	GCTCTTC	1 cut(s)	403
BssMI	GATC	4 cut(s)	13, 301, 436, 463
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	3 cut(s)	60, 213, 403
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	270, 304
BstKTI	GATC	4 cut(s)	16, 304, 439, 466
BstMBI	GATC	4 cut(s)	13, 301, 436, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	435
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	270, 304
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	435
CviAII	CATG	2 cut(s)	169, 261
CviJI	RGCY	4 cut(s)	108, 413, 449, 470
CviKI_1	RGCY	4 cut(s)	108, 413, 449, 470
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	4 cut(s)	15, 303, 438, 465
DpnII	GATC	4 cut(s)	13, 301, 436, 463
Eam1104I	CTCTTC	3 cut(s)	60, 213, 403
EarI	CTCTTC	3 cut(s)	60, 213, 403
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	172, 264
FaiI	YATR	9 cut(s)	22, 78, 120, 170, 207, 262, 312, 372, 383
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	168, 260
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	2 cut(s)	277, 311
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	1 cut(s)	319
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	2 cut(s)	172, 264
HinfI	GANTC	2 cut(s)	160, 287
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	493, 498
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	136, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	172, 264
Kzo9I	GATC	4 cut(s)	13, 301, 436, 463
LguI	GCTCTTC	1 cut(s)	403
LpnPI	CCDG	8 cut(s)	63, 146, 172, 402, 418, 457, 480, 484
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	15, 303, 438, 465
MboI	GATC	4 cut(s)	13, 301, 436, 463
MluCI	AATT	3 cut(s)	127, 345, 384
MnlI	CCTC	3 cut(s)	61, 214, 335
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	78, 173
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	4 cut(s)	13, 301, 436, 463
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	2 cut(s)	172, 264
NsiI	ATGCAT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	403
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	160, 287
PkrI	GCNGC	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
RseI	CAYNNNNRTG	2 cut(s)	78, 173
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	4 cut(s)	13, 301, 436, 463
ScrFI	CCNGG	1 cut(s)	472
SetI	ASST	5 cut(s)	135, 381, 427, 451, 509
SfaNI	GCATC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	78, 173
Sse9I	AATT	3 cut(s)	127, 345, 384
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	16, 435
TasI	AATT	3 cut(s)	127, 345, 384
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	160, 287
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.