SNF2 domain-containing protein CLASSY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19440 AT3G19440 |
| fragaria_vesca | FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 |
| malus_domestica | MD10G1097600.v1.1 |
| prunus_persica | Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 |
| pyrus_communis | pycom01g14220 pycom10g08370 |
| rosa_chinensis | RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041 |
| rosa_laevigata | RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684 |
| rosa_multiflora | Rmu_ssc0000011.1_g000078 |
| rosa_roxburghii | Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260 |
| rosa_rugosa | Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500 |
| rosa_samantha | Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500 |
| rosa_wichuraiana | Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AgsI | TTSAA | 2 cut(s) | 199, 312 |
| AluBI | AGCT | 1 cut(s) | 207 |
| AluI | AGCT | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 2 cut(s) | 66, 85 |
| BccI | CCATC | 4 cut(s) | 85, 135, 257, 277 |
| BglII | AGATCT | 1 cut(s) | 54 |
| BmcAI | AGTACT | 1 cut(s) | 317 |
| BmrI | ACTGGG | 1 cut(s) | 114 |
| BmsI | GCATC | 3 cut(s) | 166, 186, 265 |
| BmuI | ACTGGG | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseGI | GGATG | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| Bsp143I | GATC | 1 cut(s) | 54 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 1 cut(s) | 54 |
| Bst6I | CTCTTC | 1 cut(s) | 231 |
| BstF5I | GGATG | 1 cut(s) | 288 |
| BstKTI | GATC | 1 cut(s) | 57 |
| BstMBI | GATC | 1 cut(s) | 54 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BtsCI | GGATG | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 1 cut(s) | 279 |
| CviJI | RGCY | 1 cut(s) | 207 |
| CviKI_1 | RGCY | 1 cut(s) | 207 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DpnI | GATC | 1 cut(s) | 56 |
| DpnII | GATC | 1 cut(s) | 54 |
| DraI | TTTAAA | 1 cut(s) | 10 |
| Eam1104I | CTCTTC | 1 cut(s) | 231 |
| EarI | CTCTTC | 1 cut(s) | 231 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| FaeI | CATG | 1 cut(s) | 282 |
| FaiI | YATR | 4 cut(s) | 114, 215, 280, 331 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 191, 223 |
| FatI | CATG | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 295 |
| Hin1II | CATG | 1 cut(s) | 282 |
| HinfI | GANTC | 2 cut(s) | 189, 305 |
| HphI | GGTGA | 2 cut(s) | 66, 85 |
| Hpy188I | TCNGA | 1 cut(s) | 120 |
| Hpy188III | TCNNGA | 2 cut(s) | 36, 196 |
| HpyAV | CCTTC | 2 cut(s) | 95, 193 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 213, 278 |
| Hsp92II | CATG | 1 cut(s) | 282 |
| Kzo9I | GATC | 1 cut(s) | 54 |
| LmnI | GCTCC | 1 cut(s) | 144 |
| LpnPI | CCDG | 1 cut(s) | 90 |
| LweI | GCATC | 3 cut(s) | 166, 186, 265 |
| MaeIII | GTNAC | 1 cut(s) | 91 |
| MalI | GATC | 1 cut(s) | 56 |
| MboI | GATC | 1 cut(s) | 54 |
| MboII | GAAGA | 6 cut(s) | 152, 161, 184, 248, 266, 300 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MnlI | CCTC | 3 cut(s) | 75, 91, 232 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MseI | TTAA | 1 cut(s) | 9 |
| MslI | CAYNNNNRTG | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 54 |
| NlaIII | CATG | 1 cut(s) | 282 |
| NmuCI | GTSAC | 1 cut(s) | 91 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| PfeI | GAWTC | 2 cut(s) | 189, 305 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 182 |
| SaqAI | TTAA | 1 cut(s) | 9 |
| Sau3AI | GATC | 1 cut(s) | 54 |
| ScaI | AGTACT | 1 cut(s) | 317 |
| SetI | ASST | 3 cut(s) | 204, 209, 220 |
| SfaNI | GCATC | 3 cut(s) | 166, 186, 265 |
| SgeI | CNNG | 7 cut(s) | 48, 80, 101, 109, 117, 208, 291 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 182 |
| TatI | WGTACW | 1 cut(s) | 315 |
| TfiI | GAWTC | 2 cut(s) | 189, 305 |
| Tru1I | TTAA | 1 cut(s) | 9 |
| Tru9I | TTAA | 1 cut(s) | 9 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseFI | GTSAC | 1 cut(s) | 91 |
| Tsp45I | GTSAC | 1 cut(s) | 91 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspGWI | ACGGA | 1 cut(s) | 258 |
| TspRI | CASTG | 1 cut(s) | 256 |
| ZrmI | AGTACT | 1 cut(s) | 317 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |