RchiOBHm_Chr4g0415551

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001594
Physical Location & Seq
Reverse (-)
40318193 .. 40321278
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38579

Sequence Viewer

Length: 237 bp
ATGTCTTCTGCTTGGAATATAAAGAGGTCCATCAAGGTGCATTTGGTTCTGTTGGTGATGATCAGTCACTTCTTACTTGGTATCTCTGGGACAACATCAGTAACAAGCATGTCTGTAGACGGAAGCACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAAGGGCATTAGAATCTTCAAAGGATGTCGTTGTACATCCTTTATCTGATCGAAGAAAGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

5.48

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 27
BccI CCATC 3 cut(s) 38, 134, 154
BclI TGATCA 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 142
BseGI GGATG 3 cut(s) 165, 199, 205
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 60, 217
BsrGI TGTACA 1 cut(s) 202
BssMI GATC 2 cut(s) 60, 217
BstAUI TGTACA 1 cut(s) 202
BstF5I GGATG 3 cut(s) 165, 199, 205
BstKTI GATC 2 cut(s) 63, 220
BstMBI GATC 2 cut(s) 60, 217
BstNSI RCATGY 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 165, 199, 205
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 109, 156
CviQI GTAC 1 cut(s) 203
DpnI GATC 2 cut(s) 62, 219
DpnII GATC 2 cut(s) 60, 217
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 2 cut(s) 112, 159
FaiI YATR 3 cut(s) 20, 110, 157
FaqI GGGAC 1 cut(s) 103
FatI CATG 2 cut(s) 108, 155
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 117
FokI GGATG 3 cut(s) 172, 192, 206
Hin1II CATG 2 cut(s) 112, 159
HinfI GANTC 1 cut(s) 182
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 40, 155
Hsp92II CATG 2 cut(s) 112, 159
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 60, 217
LpnPI CCDG 1 cut(s) 72
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 65, 100
MalI GATC 2 cut(s) 62, 219
MboI GATC 2 cut(s) 60, 217
MboII GAAGA 3 cut(s) 143, 177, 234
MnlI CCTC 1 cut(s) 18
Mph1103I ATGCAT 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 2 cut(s) 60, 217
NlaIII CATG 2 cut(s) 112, 159
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 112
PfeI GAWTC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 27
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 35
Sau3AI GATC 2 cut(s) 60, 217
Sau96I GGNCC 1 cut(s) 27
SetI ASST 2 cut(s) 29, 39
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 114
SgeI CNNG 8 cut(s) 24, 46, 89, 99, 117, 121, 168, 183
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 35
TaqI TCGA 1 cut(s) 220
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 27
XceI RCATGY 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.