Prupe.8G135400_v2.0.a1

RNA pseudouridine synthase 4

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
15582975 .. 15586397
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G135400.1

Sequence Viewer

Length: 1452 bp
ATGATGGGCCCTATACTCCTCCGCCGGCTCCTCCTCCGGCCACCACCGTCCTCCACGGCGAGGCTCTGCATCTCAGCCTTCCACAACTGGCGATCTTACGCCACCACTGAAACATTTCACGAAGACAGAGAAAAGCGCGGTGAAAAATGGTTCACTTTACCTCCGTTTACTGCCACCATAAACGGCAGCGCTTTGGGGAAGGAGCTCTCTCGCAATCGTTCATACGGCAGAGATGTAATTACGAAGACTGCCACTGCCTCCACCACCTCCACCACTACCACGGCGCTTAAATGGGTTACTCGGTGCTGCCCGGAGCTTCCTAGAAGCCTGGTTCAGAAGCTCTTTCGCCTAAGACAGGTTCGAAGAGAATCTTGTGACATGGAGTGTTCTGGTGAAGGTGTTGAGGCACTTGAGCGCCCACTTAAAAGGGTGGCGGCTAAAGACTCAATGAACGTGGGAGATCGAATACATCTTCCTCTTTCTGTGCAAGAGTTCCCCAATGATAAACAAGAGTTGCCCAATGATAAAAAGGAGTGTTATTGTAGTGAAGAAGAAGTCACTTTTATCCGTAGCCTTGAGTTGTATAAGGATCCAGCCATTATCGTCATCAACAAACCCCCTGGAATGCCTGTTCAGGGTGGTATTGGCATCAAAAGAAGTTTAGATGAACTGGCTGCCGCTTGTTTAAGTTATGACTTCTCAGAACCCCCTCGGCTGGTACACAGACTTGACAGAGATAGTAGTGGTATCCTGGTGATGGGAAGGACACAAACAAGTGCGACAGTTTTGCATTCCATCTTCCGCGAGAAAACTTTTGGAGCATCAAATGATGAAATTGATGATGCAAAAAGAATTCTGCAAAGAAGGTATTGGGCACTTGTCATTGGATCTCCCAGACAACGAAAGGGTTTAATCTCAGCACCTTTGGGAAAGGTGGTAGTGGACAATGGTAAATCAGATCGAATCACAATTGTGAACGATTCACAAACTTTGCCATCTCAGCATGCCATTACAAAGTACAAAGTAATTGGATCACCATGTCCTGGTTACACATGGTTAGAGCTAACCCCTCTTACTGGCCGAAAGCATCAGCTGCGTGTACACTGTGCAGAGGTTCTGCGAACACCGATAGTTGGAGACTACAAGTATGGGTGGCAAACTCATAGGAACTGGAAACCCTTAGCTTGGTCTAATAATGAATGTCATTCAGATGAGGAGTTTCCCAAGAGAAAAAACCTCCCTTTTGATCTCAATATGGAAAGCGGAAGTGTCTCTGAAAAGAATCCCCGCCTGCATCTTCATTGTAAGCAAATGGTTTTGCCTAATGTGAATCTGGCTTTGCAAAATGTGAAACTGCATTCAGATAGTGATCTTTCAGAATTAGAAAGCCTAGAATTGGTTGCTGCTCTGCCTTCGTTCATGCAAAGAAGTTGGAATATTACAAATTCTTAA

Protein Analysis

484

Amino Acids

54.68

Weight (kDa)

9.16

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1043
AccII CGCG 2 cut(s) 138, 804
AciI CCGC 7 cut(s) 22, 138, 434, 678, 802, 1263, 1288
AclWI GGATC 4 cut(s) 584, 597, 895, 1039
AcoI YGGCCR 2 cut(s) 38, 1078
AcsI RAATTY 2 cut(s) 852, 1444
AfaI GTAC 3 cut(s) 720, 1019, 1101
AfeI AGCGCT 1 cut(s) 190
AjnI CCWGG 4 cut(s) 327, 619, 750, 1042
AleI CACNNNNGTG 1 cut(s) 971
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 6 cut(s) 205, 316, 340, 1063, 1093, 1184
AluI AGCT 6 cut(s) 205, 316, 340, 1063, 1093, 1184
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 1131, 1276
AlwI GGATC 4 cut(s) 584, 597, 895, 1039
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 3 cut(s) 7, 38, 1078
ApaI GGGCCC 1 cut(s) 11
ApeKI GCWGC 5 cut(s) 186, 306, 674, 1093, 1403
ApoI RAATTY 2 cut(s) 852, 1444
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 4 cut(s) 138, 191, 286, 417
AspS9I GGNCC 2 cut(s) 7, 8
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 4 cut(s) 152, 404, 766, 1026
AsuII TTCGAA 1 cut(s) 361
BaeGI GKGCMC 2 cut(s) 11, 877
BamHI GGATCC 1 cut(s) 589
BanII GRGCYC 2 cut(s) 11, 207
BbsI GAAGAC 2 cut(s) 129, 251
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 198, 293, 661, 1080, 1390
BccI CCATC 3 cut(s) 751, 803, 1003
BceAI ACGGC 4 cut(s) 72, 199, 241, 297
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 4 cut(s) 329, 621, 752, 1044
BciVI GTATCC 1 cut(s) 758
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 2 cut(s) 1131, 1276
BfaI CTAG 2 cut(s) 321, 1391
BfoI RGCGCY 3 cut(s) 192, 287, 418
BfuI GTATCC 1 cut(s) 758
BisI GCNGC 7 cut(s) 187, 307, 435, 675, 678, 1094, 1404
BlsI GCNGC 7 cut(s) 188, 308, 436, 676, 679, 1095, 1405
Bme1390I CCNGG 5 cut(s) 311, 329, 621, 752, 1044
BmgT120I GGNCC 2 cut(s) 7, 8
BmiI GGNNCC 3 cut(s) 9, 29, 591
BmrFI CCNGG 5 cut(s) 311, 329, 621, 752, 1044
BmsI GCATC 6 cut(s) 78, 657, 830, 832, 1096, 1303
BpiI GAAGAC 2 cut(s) 129, 251
Bpu10I CCTNAGC 1 cut(s) 1180
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 2 cut(s) 431, 596
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 1368
BsaJI CCNNGG 4 cut(s) 54, 279, 619, 710
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 4 cut(s) 92, 675, 1081, 1175
Bse8I GATNNNNATC 1 cut(s) 1368
BseBI CCWGG 4 cut(s) 329, 621, 752, 1044
BseDI CCNNGG 4 cut(s) 54, 279, 619, 710
BseJI GATNNNNATC 1 cut(s) 1368
BseMII CTCAG 4 cut(s) 87, 714, 930, 1013
BseNI ACTGG 4 cut(s) 92, 675, 1081, 1175
BseRI GAGGAG 4 cut(s) 8, 20, 23, 1229
BseSI GKGCMC 2 cut(s) 11, 877
BseXI GCAGC 5 cut(s) 198, 293, 661, 1080, 1390
BsgI GTGCAG 1 cut(s) 1128
Bsh1236I CGCG 2 cut(s) 138, 804
BshFI GGCC 3 cut(s) 9, 40, 1080
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 25, 37, 311
BsmAI GTCTC 2 cut(s) 1131, 1276
BsmI GAATGC 3 cut(s) 630, 790, 1357
BsnI GGCC 3 cut(s) 9, 40, 1080
Bsp119I TTCGAA 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 3 cut(s) 11, 207, 877
Bsp1407I TGTACA 1 cut(s) 1099
Bsp143I GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
BspACI CCGC 7 cut(s) 22, 138, 434, 678, 802, 1263, 1288
BspANI GGCC 3 cut(s) 9, 40, 1080
BspCNI CTCAG 4 cut(s) 86, 713, 929, 1012
BspFNI CGCG 2 cut(s) 138, 804
BspLI GGNNCC 3 cut(s) 9, 29, 591
BspPI GGATC 4 cut(s) 584, 597, 895, 1039
BspT104I TTCGAA 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 1099
BsrI ACTGG 4 cut(s) 92, 675, 1081, 1175
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 54, 279, 619, 710
BssMI GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
Bst2UI CCWGG 4 cut(s) 329, 621, 752, 1044
Bst4CI ACNGT 3 cut(s) 48, 784, 1106
Bst6I CTCTTC 1 cut(s) 358
BstAPI GCANNNNNTGC 1 cut(s) 1093
BstAUI TGTACA 1 cut(s) 1099
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 26, 1005, 1292
BstDEI CTNAG 6 cut(s) 73, 350, 700, 916, 999, 1180
BstDSI CCRYGG 2 cut(s) 54, 279
BstENI CCTNNNNNAGG 1 cut(s) 353
BstFNI CGCG 2 cut(s) 138, 804
BstH2I RGCGCY 3 cut(s) 192, 287, 418
BstHHI GCGC 4 cut(s) 138, 191, 286, 417
BstKTI GATC 8 cut(s) 95, 463, 592, 890, 961, 1034, 1249, 1372
BstMAI GTCTC 2 cut(s) 1131, 1276
BstMBI GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
BstMWI GCNNNNNNNGC 2 cut(s) 1000, 1093
BstNI CCWGG 4 cut(s) 329, 621, 752, 1044
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 5 cut(s) 309, 327, 619, 750, 1042
BstSLI GKGCMC 2 cut(s) 11, 877
BstUI CGCG 2 cut(s) 138, 804
BstV1I GCAGC 5 cut(s) 198, 293, 661, 1080, 1390
BstV2I GAAGAC 2 cut(s) 129, 251
BstX2I RGATCY 2 cut(s) 589, 887
BstYI RGATCY 2 cut(s) 589, 887
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 3 cut(s) 9, 40, 1080
BtgI CCRYGG 2 cut(s) 54, 279
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 105, 252, 1102
Cac8I GCNNGC 3 cut(s) 26, 1005, 1292
CfoI GCGC 4 cut(s) 138, 191, 286, 417
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 7, 8
Csp6I GTAC 3 cut(s) 719, 1018, 1100
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 5 cut(s) 379, 1004, 1038, 1053, 1420
CviQI GTAC 3 cut(s) 719, 1018, 1100
DdeI CTNAG 6 cut(s) 73, 350, 700, 916, 999, 1180
DpnI GATC 8 cut(s) 94, 462, 591, 889, 960, 1033, 1248, 1371
DpnII GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
EaeI YGGCCR 2 cut(s) 38, 1078
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
EciI GGCGGA 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 11, 207
Eco47III AGCGCT 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 852
EcoRII CCWGG 4 cut(s) 327, 619, 750, 1042
EcoT38I GRGCYC 2 cut(s) 11, 207
FaeI CATG 5 cut(s) 382, 1007, 1041, 1056, 1423
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 5 cut(s) 378, 1003, 1037, 1052, 1419
FauI CCCGC 1 cut(s) 1295
Fnu4HI GCNGC 7 cut(s) 187, 307, 435, 675, 678, 1094, 1404
FriOI GRGCYC 2 cut(s) 11, 207
Fsp4HI GCNGC 7 cut(s) 187, 307, 435, 675, 678, 1094, 1404
FspBI CTAG 2 cut(s) 321, 1391
GlaI GCGC 4 cut(s) 137, 190, 285, 416
GluI GCNGC 7 cut(s) 187, 307, 435, 675, 678, 1094, 1404
HaeII RGCGCY 3 cut(s) 192, 287, 418
HaeIII GGCC 3 cut(s) 9, 40, 1080
HapII CCGG 3 cut(s) 25, 37, 311
HhaI GCGC 4 cut(s) 138, 191, 286, 417
Hin1II CATG 5 cut(s) 382, 1007, 1041, 1056, 1423
Hin6I GCGC 4 cut(s) 136, 189, 284, 415
HinP1I GCGC 4 cut(s) 136, 189, 284, 415
HinfI GANTC 6 cut(s) 368, 443, 963, 980, 1282, 1330
HpaII CCGG 3 cut(s) 25, 37, 311
HphI GGTGA 4 cut(s) 152, 404, 766, 1026
Hpy166II GTNNAC 7 cut(s) 153, 168, 721, 943, 976, 1100, 1102
Hpy188I TCNGA 7 cut(s) 336, 703, 958, 1210, 1276, 1363, 1378
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 7 cut(s) 153, 168, 721, 943, 976, 1100, 1102
HpyAV CCTTC 6 cut(s) 88, 193, 389, 756, 858, 1422
HpyCH4III ACNGT 3 cut(s) 48, 784, 1106
HpyCH4IV ACGT 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 1000, 1093
HpyF3I CTNAG 6 cut(s) 73, 350, 700, 916, 999, 1180
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 5 cut(s) 382, 1007, 1041, 1056, 1423
HspAI GCGC 4 cut(s) 136, 189, 284, 415
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
LmnI GCTCC 4 cut(s) 33, 202, 313, 818
Lsp1109I GCAGC 5 cut(s) 198, 293, 661, 1080, 1390
LweI GCATC 6 cut(s) 78, 657, 830, 832, 1096, 1303
MaeI CTAG 2 cut(s) 321, 1391
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 4 cut(s) 295, 374, 556, 1046
MalI GATC 8 cut(s) 94, 462, 591, 889, 960, 1033, 1248, 1371
MboI GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
MboII GAAGA 8 cut(s) 134, 256, 375, 464, 560, 563, 790, 1289
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 2 cut(s) 589, 887
MhlI GDGCHC 3 cut(s) 11, 207, 877
MluCI AATT 8 cut(s) 237, 834, 852, 969, 1026, 1379, 1394, 1444
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 1114, 1412
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 5 cut(s) 288, 423, 686, 911, 1450
MslI CAYNNNNRTG 2 cut(s) 971, 1209
MspA1I CMGCKG 1 cut(s) 1093
MspI CCGG 3 cut(s) 25, 37, 311
MspR9I CCNGG 5 cut(s) 311, 329, 621, 752, 1044
MunI CAATTG 1 cut(s) 969
Mva1269I GAATGC 3 cut(s) 630, 790, 1357
MvaI CCWGG 4 cut(s) 329, 621, 752, 1044
MvnI CGCG 2 cut(s) 138, 804
MwoI GCNNNNNNNGC 2 cut(s) 1000, 1093
NaeI GCCGGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 311
NdeII GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 5 cut(s) 382, 1007, 1041, 1056, 1423
NlaIV GGNNCC 3 cut(s) 9, 29, 591
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 374, 556
NspI RCATGY 1 cut(s) 1007
NspV TTCGAA 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 971
PaeI GCATGC 1 cut(s) 1007
PctI GAATGC 3 cut(s) 630, 790, 1357
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 5 cut(s) 368, 963, 980, 1282, 1330
PflMI CCANNNNNTGG 1 cut(s) 1043
PkrI GCNGC 7 cut(s) 188, 308, 436, 676, 679, 1095, 1405
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 4 cut(s) 327, 619, 750, 1042
PspGI CCWGG 4 cut(s) 327, 619, 750, 1042
PspN4I GGNNCC 3 cut(s) 9, 29, 591
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 7, 8
PsuI RGATCY 2 cut(s) 589, 887
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 3 cut(s) 720, 1019, 1101
RsaNI GTAC 3 cut(s) 719, 1018, 1100
RseI CAYNNNNRTG 2 cut(s) 971, 1209
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 5 cut(s) 288, 423, 686, 911, 1450
SatI GCNGC 7 cut(s) 187, 307, 435, 675, 678, 1094, 1404
Sau3AI GATC 8 cut(s) 92, 460, 589, 887, 958, 1031, 1246, 1369
Sau96I GGNCC 2 cut(s) 7, 8
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 5 cut(s) 311, 329, 621, 752, 1044
SduI GDGCHC 3 cut(s) 11, 207, 877
SfaNI GCATC 6 cut(s) 78, 657, 830, 832, 1096, 1303
SfuI TTCGAA 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 971, 1209
SmlI CTYRAG 2 cut(s) 410, 575
SmoI CTYRAG 2 cut(s) 410, 575
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 8 cut(s) 237, 834, 852, 969, 1026, 1379, 1394, 1444
SsiI CCGC 7 cut(s) 22, 138, 434, 678, 802, 1263, 1288
SspI AATATT 1 cut(s) 1438
SspMI CTAG 2 cut(s) 321, 1391
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 5 cut(s) 309, 327, 619, 750, 1042
TaaI ACNGT 3 cut(s) 48, 784, 1106
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 361, 463, 961
TasI AATT 8 cut(s) 237, 834, 852, 969, 1026, 1379, 1394, 1444
TatI WGTACW 2 cut(s) 1017, 1099
TauI GCSGC 2 cut(s) 437, 680
TfiI GAWTC 5 cut(s) 368, 963, 980, 1282, 1330
Tru1I TTAA 5 cut(s) 288, 423, 686, 911, 1450
Tru9I TTAA 5 cut(s) 288, 423, 686, 911, 1450
TscAI CASTG 3 cut(s) 112, 259, 1109
TseFI GTSAC 2 cut(s) 374, 556
TseI GCWGC 5 cut(s) 186, 306, 674, 1093, 1403
Tsp45I GTSAC 2 cut(s) 374, 556
TspDTI ATGAA 7 cut(s) 210, 464, 681, 846, 1212, 1289, 1408
TspGWI ACGGA 2 cut(s) 153, 557
TspRI CASTG 3 cut(s) 112, 259, 1109
Van91I CCANNNNNTGG 1 cut(s) 1043
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 852, 1444
XceI RCATGY 1 cut(s) 1007
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 321, 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.