Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Reverse (-)

48746891 .. 48750218

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAACTTAGAAGATCGAATATGTCTTCCTATTTCTGTGAAAGAGTTCCCTGATGACAAACAAGAAGATGGACATTATAGTGAAGAAGAAGTCAAGTTTATTCGTAGCCTTGTGCTATATAAGGATCCAGCTATTGTCGTCTTCAATAAACCCCCTGGATTGCCTGTTCAGGGTGGTATTGGAATCAAAAGGAGTGTTTATGTTGGTGTAGAAGAGGATGGAAGCACTGAAGATGATGATAGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTCAAAGGATGATCTTGGGTATGTTTGCCGCATTTGTGGGGTTATTGATAGAGGAATTGATATGATATTTGAGTTTCAGTATAACAAGGGATGGACTCTTTTACGAGATACTTGTTTTTCAATTGTATACTCCTTACTAATTGCTTCTAATGCTGTTAATGATCTTCTAGTACTCCACTTCCTCATAGTTAATCAGTTTGCACTACAAAAAAGAATTGCAATGGCTACAGCAAAGGGCCACGGCGCAGAATTGCAGGAAGCCCTAGCAGAAGGAGGCCCAATAGAAGCCCAGATGGAATTGATGAGGCCACCCGATCACTTGGGCACCCTATCCAACAGCCACCACCCACTAGTCTGCCTCCCTTCAAAGACGCCGGTCGAGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

225

Amino Acids

24.88

Weight (kDa)

4.72

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	2 cut(s)	119, 132
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	145, 288, 405, 651
AhlI	ACTAGT	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	154
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AlwI	GGATC	2 cut(s)	119, 132
AoxI	GGCC	3 cut(s)	520, 559, 590
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	520, 560
BaeGI	GKGCMC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	608
BbsI	GAAGAC	2 cut(s)	17, 133
BccI	CCATC	5 cut(s)	62, 212, 253, 369, 571
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	156
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	3 cut(s)	452, 548, 635
BfmI	CTRYAG	1 cut(s)	510
BglII	AGATCT	1 cut(s)	669
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	520, 560
BmiI	GGNNCC	2 cut(s)	126, 610
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	2 cut(s)	17, 133
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	154, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	658
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	154, 523
BseGI	GGATG	4 cut(s)	223, 264, 298, 380
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	3 cut(s)	522, 561, 592
BshNI	GGYRCC	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	3 cut(s)	522, 561, 592
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	3 cut(s)	522, 561, 592
BspLI	GGNNCC	2 cut(s)	126, 610
BspPI	GGATC	2 cut(s)	119, 132
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	2 cut(s)	154, 523
BssMI	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
BssNAI	GTATAC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	656
Bst1107I	GTATAC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	656
BstDEI	CTNAG	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	4 cut(s)	223, 264, 298, 380
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	6 cut(s)	16, 127, 298, 448, 601, 672
BstMBI	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	611
BstV2I	GAAGAC	2 cut(s)	17, 133
BstX2I	RGATCY	2 cut(s)	124, 669
BstYI	RGATCY	2 cut(s)	124, 669
BstZ17I	GTATAC	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	522, 561, 592
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	4 cut(s)	223, 264, 298, 380
BtsIMutI	CAGTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	520, 560
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	9 cut(s)	108, 131, 509, 522, 545, 561, 572, 592, 624
CviKI_1	RGCY	9 cut(s)	108, 131, 509, 522, 545, 561, 572, 592, 624
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	6 cut(s)	15, 126, 297, 447, 600, 671
DpnII	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	1 cut(s)	258
FatI	CATG	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	4 cut(s)	230, 271, 305, 387
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	3 cut(s)	452, 548, 635
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	522, 561, 592
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	3 cut(s)	183, 281, 379
HpaII	CCGG	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	674
Hpy188III	TCNNGA	1 cut(s)	664
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	548, 657
HpyCH4V	TGCA	4 cut(s)	254, 485, 503, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	7
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
LpnPI	CCDG	8 cut(s)	63, 141, 141, 155, 168, 177, 524, 587
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	452, 548, 635
MalI	GATC	6 cut(s)	15, 126, 297, 447, 600, 671
MboI	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	124, 669
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	6 cut(s)	339, 405, 423, 498, 533, 581
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	6 cut(s)	208, 329, 476, 551, 582, 653
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	2 cut(s)	441, 474
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	2 cut(s)	126, 610
NsiI	ATGCAT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	183, 281
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PshAI	GACNNNNGTC	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	126, 610
PspPI	GGNCC	2 cut(s)	520, 560
PsuI	RGATCY	2 cut(s)	124, 669
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	441, 474
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	6 cut(s)	13, 124, 295, 445, 598, 669
Sau96I	GGNCC	2 cut(s)	520, 560
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	78
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	6 cut(s)	339, 405, 423, 498, 533, 581
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	3 cut(s)	452, 548, 635
StyD4I	CCNGG	1 cut(s)	154
TaqI	TCGA	2 cut(s)	16, 663
TasI	AATT	6 cut(s)	339, 405, 423, 498, 533, 581
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	183, 281
Tru1I	TTAA	2 cut(s)	441, 474
Tru9I	TTAA	2 cut(s)	441, 474
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	3 cut(s)	452, 548, 635
ZrmI	AGTACT	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.