RLG00000024043

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001594
Physical Location & Seq
Forward (+)
31153114 .. 31155725
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024043

Sequence Viewer

Length: 375 bp
ATGGCCACCACCATAATCTCTCTCACTGTCGCCGCCGGTCACAAGATAGCTCTCAGAGATGTGTATACTAAACCCTCCACCTCCACAGCTACGACGACGCTTAATGGGTCACCAGAGTTCCCTGATGACAAACAAGAAGAGGGAGATTATAGTGAAGAAGAAGTCAAGTTTATTTGTAGCCTTGTGCTGTATAAGGATCCAGCTATTGTCGTCTTCAATAAACCCCCTGGATTGCCTGTTCAGGAAAGAATGAGTGAAGGCGACAGTGAGCATTATTTTGTCTTAAAGGATGATCTTGGGTATGTTTGCCGCATTTGTGGGGTTATTGATAGAGGAATTGATACGTTATTTGAGTTTCAGTATAACAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

4.63

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AciI CCGC 2 cut(s) 33, 310
AclWI GGATC 2 cut(s) 191, 204
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 3 cut(s) 50, 89, 203
AluI AGCT 3 cut(s) 50, 89, 203
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 102
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 228
BisI GCNGC 2 cut(s) 33, 310
BlsI GCNGC 2 cut(s) 34, 311
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 35
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 67
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 36
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 196, 292
BspACI CCGC 2 cut(s) 33, 310
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 191, 204
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 196, 292
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 28, 266
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 53
BstEII GGTNACC 1 cut(s) 108
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 199, 295
BstMBI GATC 2 cut(s) 196, 292
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 24, 271
Cfr10I RCCGGY 1 cut(s) 35
CseI GACGC 1 cut(s) 106
CviJI RGCY 5 cut(s) 5, 50, 89, 180, 203
CviKI_1 RGCY 5 cut(s) 5, 50, 89, 180, 203
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 198, 294
DpnII GATC 2 cut(s) 196, 292
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 226
FaiI YATR 7 cut(s) 14, 66, 150, 192, 303, 363, 373
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 33, 310
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 33, 310
GluI GCNGC 2 cut(s) 33, 310
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 106
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 97, 100
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 28, 266
HpyCH4IV ACGT 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 344
Kzo9I GATC 2 cut(s) 196, 292
LpnPI CCDG 8 cut(s) 49, 126, 135, 213, 213, 227, 240, 249
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 38, 108
MalI GATC 2 cut(s) 198, 294
MboI GATC 2 cut(s) 196, 292
MboII GAAGA 4 cut(s) 149, 167, 170, 205
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 336
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 85, 91, 133, 326
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 102, 284
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
NdeII GATC 2 cut(s) 196, 292
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 38, 108
PkrI GCNGC 2 cut(s) 34, 311
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 196
SaqAI TTAA 2 cut(s) 102, 284
SatI GCNGC 2 cut(s) 33, 310
Sau3AI GATC 2 cut(s) 196, 292
ScrFI CCNGG 1 cut(s) 228
SetI ASST 6 cut(s) 52, 83, 91, 205, 347, 372
Sse9I AATT 1 cut(s) 336
SsiI CCGC 2 cut(s) 33, 310
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 28, 266
TaiI ACGT 1 cut(s) 347
TasI AATT 1 cut(s) 336
TauI GCSGC 2 cut(s) 35, 312
Tru1I TTAA 2 cut(s) 102, 284
Tru9I TTAA 2 cut(s) 102, 284
TscAI CASTG 2 cut(s) 31, 271
TseFI GTSAC 2 cut(s) 38, 108
Tsp45I GTSAC 2 cut(s) 38, 108
TspRI CASTG 2 cut(s) 31, 271
XmiI GTMKAC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.