Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

9863745 .. 9868512

Gene Structure 4768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGAAGCGACGTAGGCCATGTCCGTGGCGCGATTTCAATATCAAGAGCGACGGAGTATCAAACGCGGTCGCTAACACAGCTCAAAATGCGTTTTAAAAAAATAGAAAAAACATTCACTTTGGGAAAAGAAGCAGAACAGATCTCTCTCCCTCTCGCTTCACCATCTATCCTTCTCGTCACCGAGTATGTGGAGAAATCTCTCATCACCTTCTTGACTATTGTAGCTTTTCTCTTGGAAACTGGGCAATCTGATTTTCCATTATCATCTGCTCCTACCAATGCTGTTGCATCTTCATCATCTTCACAGTATCACAATGCGATTCTTGTGAGTGACAGACAGGTCCATCAAGGTGCATTTGGTTCTGTTGGTGATGATCAGTCACTTCTTACTTGGTATCTCTGGGACAACATCAATAACAAGCATGTCTGTGTTTATGTTGGTGTAGAAGAGGACAGAAGCACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTCAAAGGGTAAGATATACTTTGAGCTGATGGGAGAGGAAAGCATCAAGATTGAAATTGATGAAATCTCTCTCGCAAAGGCTATGCTTCGAGGCGTGGCCGGAGGAAGTGCGACTTGGCGTAGACTCATGGGGCGAAGCGAAGGCAAAGTGGTGAGGACTCTTTGGGCGAGGACTACTTATACAGGCTGGGCAAAGAGGCCGATAACAAGAACATCGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000710 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006296 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010213 GO:0010224 GO:0010332 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048256 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070522 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03420 ko03460 map01524 map03420 map03460

Pfam Domains

Protein Families

HHH_2 HHH_5 Rad10

Protein Analysis

247

Amino Acids

27.35

Weight (kDa)

5.88

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	643
AccII	CGCG	2 cut(s)	32, 67
AciI	CCGC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	39, 525, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AluBI	AGCT	3 cut(s)	82, 227, 547
AluI	AGCT	3 cut(s)	82, 227, 547
AoxI	GGCC	3 cut(s)	16, 618, 719
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	5 cut(s)	153, 172, 199, 383, 685
AvaII	GGWCC	1 cut(s)	343
BccI	CCATC	5 cut(s)	172, 354, 470, 490, 544
BceAI	ACGGC	1 cut(s)	724
BclI	TGATCA	1 cut(s)	376
BglII	AGATCT	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	299, 478, 573
BmuI	ACTGGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	708
Bsh1236I	CGCG	2 cut(s)	32, 67
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	18, 620, 721
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	18, 620, 721
Bsp143I	GATC	2 cut(s)	141, 376
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	3 cut(s)	18, 620, 721
BspFNI	CGCG	2 cut(s)	32, 67
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	141, 376
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	501
BstFNI	CGCG	2 cut(s)	32, 67
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	144, 379
BstMBI	GATC	2 cut(s)	141, 376
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 79, 88
BstNSI	RCATGY	1 cut(s)	428
BstUI	CGCG	2 cut(s)	32, 67
BstX2I	RGATCY	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	18, 620, 721
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	720
BtsCI	GGATG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	462
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	4 cut(s)	20, 425, 492, 649
CviJI	RGCY	8 cut(s)	18, 82, 227, 547, 602, 620, 708, 721
CviKI_1	RGCY	8 cut(s)	18, 82, 227, 547, 602, 620, 708, 721
DpnI	GATC	2 cut(s)	143, 378
DpnII	GATC	2 cut(s)	141, 376
DraI	TTTAAA	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	493
FaeI	CATG	4 cut(s)	23, 428, 495, 652
FaiI	YATR	9 cut(s)	21, 189, 426, 438, 493, 538, 605, 650, 702
FalI	AAGNNNNNCTT	4 cut(s)	524, 556, 619, 651
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	19, 424, 491, 648
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	643
FokI	GGATG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	31
GsaI	CCCAGC	1 cut(s)	712
HaeIII	GGCC	3 cut(s)	18, 620, 721
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	23, 428, 495, 652
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	322, 518, 645, 679
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	5 cut(s)	153, 172, 199, 383, 685
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	45, 214, 568
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	2 cut(s)	14, 55
HpyAV	CCTTC	3 cut(s)	182, 220, 656
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	290, 356, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 79, 88
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	23, 428, 495, 652
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	141, 376
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	228, 326, 388, 634, 690, 694
LweI	GCATC	3 cut(s)	299, 478, 573
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	178, 332, 381
MalI	GATC	2 cut(s)	143, 378
MboI	GATC	2 cut(s)	141, 376
MboII	GAAGA	5 cut(s)	285, 294, 461, 479, 513
MflI	RGATCY	1 cut(s)	141
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	639, 673
MnlI	CCTC	8 cut(s)	162, 445, 550, 605, 617, 669, 684, 711
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	3 cut(s)	24, 351, 429
MspI	CCGG	1 cut(s)	621
MvnI	CGCG	2 cut(s)	32, 67
MwoI	GCNNNNNNNGC	3 cut(s)	15, 79, 88
NdeII	GATC	2 cut(s)	141, 376
NlaIII	CATG	4 cut(s)	23, 428, 495, 652
NmuCI	GTSAC	3 cut(s)	178, 332, 381
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	322, 518
PleI	GAGTC	2 cut(s)	639, 673
PpsI	GAGTC	2 cut(s)	639, 673
PspFI	CCCAGC	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	141
RseI	CAYNNNNRTG	3 cut(s)	24, 351, 429
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	141, 376
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	2 cut(s)	639, 673
SetI	ASST	7 cut(s)	15, 84, 212, 229, 345, 355, 549
SfaNI	GCATC	3 cut(s)	299, 478, 573
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	3 cut(s)	24, 351, 429
Sse9I	AATT	1 cut(s)	576
SsiI	CCGC	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	610
TasI	AATT	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	322, 518
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	3 cut(s)	178, 332, 381
Tsp45I	GTSAC	3 cut(s)	178, 332, 381
TspDTI	ATGAA	2 cut(s)	285, 597
TspGWI	ACGGA	2 cut(s)	14, 68
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	343
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	643
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.