Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

10005650 .. 10012489

Gene Structure 6840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG117700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGAAGTGACGTAGGCCATGTCCGTGGCGCGATTTCAATATCAAGAGCGACGGAGTATCAAACGCGGTCGCTAACACAGCTCAAAATGCGTTTTAAAAAAATAGAAAAACCATTCACTTCGGGAAAAGAAGCAGAACAGATCTCTCTCCCTCTCGCTTCACCATCTATCCTTCTCATCACCAAGGAAACTGGGCAATCTGATGTTCCATCATCATCTGCTCCTACCAATGTTGTTGCATCTTCATCATCTTCACAGCATCACAATGCGATTCTTGTGAGTGACAGACAGGAACTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000710 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006296 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010213 GO:0010224 GO:0010332 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048256 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070522 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03420 ko03460 map01524 map03420 map03460

Pfam Domains

Protein Families

HHH_2 HHH_5 Rad10

Protein Analysis

100

Amino Acids

10.75

Weight (kDa)

9.22

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 67
AciI	CCGC	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AoxI	GGCC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	153, 172
BccI	CCATC	2 cut(s)	172, 217
BglII	AGATCT	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	248, 268
BmuI	ACTGGG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	25, 183
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	25, 183
BseNI	ACTGG	1 cut(s)	196
Bsh1236I	CGCG	2 cut(s)	32, 67
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	32, 67
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	25, 183
BssMI	GATC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	32, 67
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 88
BstUI	CGCG	2 cut(s)	32, 67
BstX2I	RGATCY	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	32
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	2 cut(s)	18, 82
CviKI_1	RGCY	2 cut(s)	18, 82
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DraI	TTTAAA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 301
FatI	CATG	1 cut(s)	19
GlaI	GCGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	153, 172
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	45, 123
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 88
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	177, 275
LweI	GCATC	2 cut(s)	248, 268
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	8, 281
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	234, 243
MflI	RGATCY	1 cut(s)	141
MnlI	CCTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	24, 264
MvnI	CGCG	2 cut(s)	32, 67
MwoI	GCNNNNNNNGC	2 cut(s)	79, 88
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	8, 281
PfeI	GAWTC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	24, 264
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	141
SetI	ASST	2 cut(s)	15, 84
SfaNI	GCATC	2 cut(s)	248, 268
SmiMI	CAYNNNNRTG	2 cut(s)	24, 264
SsiI	CCGC	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	8, 281
Tsp45I	GTSAC	2 cut(s)	8, 281
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	2 cut(s)	14, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.