Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

25042803 .. 25046578

Gene Structure 3776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCGATTTACATCCTTTATCTGATCGAAGAAAGAATGAGTGAAGGCTACAGTGAGCATTCTTTTGTCTTAAAGGATGATCTTGGATATGTTTGCTGTATCTGTGGGGTTATTGATAGAGGAATTTATACGATATTTGAGTTTCAGTATAACAAGGGTAAGATATACTTTGAGCTGATGGGAGAGGAAAGCATCAAGGTCAAGACAATATTACTTCCTTTAATTTCATTTTCTTCATTGAATCGTAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

84

Amino Acids

9.81

Weight (kDa)

5.0

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	123
BccI	CCATC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	2 cut(s)	12, 82
BseJI	GATNNNNATC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	24, 79
BssMI	GATC	2 cut(s)	24, 79
Bst4CI	ACNGT	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	12, 82
BstKTI	GATC	2 cut(s)	27, 82
BstMBI	GATC	2 cut(s)	24, 79
BstSFI	CTRYAG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	12, 82
BtsIMutI	CAGTG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	48, 175
CviKI_1	RGCY	2 cut(s)	48, 175
DpnI	GATC	2 cut(s)	26, 81
DpnII	GATC	2 cut(s)	24, 79
FaiI	YATR	4 cut(s)	90, 129, 150, 166
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	1 cut(s)	253
HinfI	GANTC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	24, 79
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	253
MalI	GATC	2 cut(s)	26, 81
MboI	GATC	2 cut(s)	24, 79
MboII	GAAGA	2 cut(s)	41, 225
MluCI	AATT	2 cut(s)	123, 222
MnlI	CCTC	2 cut(s)	113, 178
MseI	TTAA	2 cut(s)	71, 221
Mva1269I	GAATGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	24, 79
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	71, 221
Sau3AI	GATC	2 cut(s)	24, 79
SetI	ASST	2 cut(s)	177, 201
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	49
SgeI	CNNG	4 cut(s)	95, 166, 208, 214
Sse9I	AATT	2 cut(s)	123, 222
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	5, 27
TasI	AATT	2 cut(s)	123, 222
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	71, 221
Tru9I	TTAA	2 cut(s)	71, 221
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	216, 225
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	123
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.