Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Reverse (-)

72120410 .. 72125158

Gene Structure 4749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG449900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGTTTGATGGGACATGCTGGGAAGCAAAGAGCCTTTGGCAAAGTCAGAGTCGCAACTGAGGGCTCAACTTCAGACCTATTTCCTATAGAGAGAAGAAGAGTGGTGGAGAAGGAGATAGACACAAAGAAGAACATAGCTATCAATGAAGCAAAGAAGAATACCAATGCGATGAGGATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000122 GO:0001775 GO:0001776 GO:0001932 GO:0001933 GO:0001941 GO:0001959 GO:0001960 GO:0002260 GO:0002376 GO:0002520 GO:0002521 GO:0002682 GO:0002683 GO:0002684 GO:0002694 GO:0002696 GO:0003674 GO:0005102 GO:0005126 GO:0005133 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006355 GO:0006357 GO:0006457 GO:0006469 GO:0006725 GO:0006807 GO:0006915 GO:0006919 GO:0006924 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0007264 GO:0007275 GO:0007528 GO:0007568 GO:0007569 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008285 GO:0009058 GO:0009059 GO:0009295 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010951 GO:0010952 GO:0012501 GO:0016020 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019897 GO:0019898 GO:0019899 GO:0019900 GO:0019901 GO:0022407 GO:0022409 GO:0023051 GO:0023052 GO:0023057 GO:0030097 GO:0030098 GO:0030154 GO:0030155 GO:0030162 GO:0030217 GO:0030234 GO:0030544 GO:0030695 GO:0030971 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031400 GO:0031401 GO:0031594 GO:0031647 GO:0031974 GO:0032042 GO:0032088 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032944 GO:0032946 GO:0033036 GO:0033077 GO:0033673 GO:0034097 GO:0034341 GO:0034613 GO:0034641 GO:0034645 GO:0035556 GO:0042102 GO:0042110 GO:0042127 GO:0042129 GO:0042221 GO:0042325 GO:0042326 GO:0042592 GO:0042645 GO:0042981 GO:0043029 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043086 GO:0043113 GO:0043122 GO:0043124 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043433 GO:0043549 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045202 GO:0045211 GO:0045321 GO:0045785 GO:0045824 GO:0045859 GO:0045861 GO:0045862 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0046649 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050670 GO:0050671 GO:0050776 GO:0050777 GO:0050789 GO:0050790 GO:0050794 GO:0050808 GO:0050821 GO:0050863 GO:0050865 GO:0050867 GO:0050870 GO:0050896 GO:0051059 GO:0051082 GO:0051090 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051249 GO:0051251 GO:0051252 GO:0051253 GO:0051336 GO:0051338 GO:0051345 GO:0051346 GO:0051348 GO:0051641 GO:0051668 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060330 GO:0060331 GO:0060334 GO:0060336 GO:0060548 GO:0060589 GO:0060759 GO:0060761 GO:0061024 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070227 GO:0070231 GO:0070663 GO:0070665 GO:0070727 GO:0071340 GO:0071704 GO:0071840 GO:0071887 GO:0071944 GO:0072657 GO:0080090 GO:0080134 GO:0090304 GO:0097060 GO:0098590 GO:0098772 GO:0098794 GO:0099173 GO:1901360 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903037 GO:1903039 GO:1903320 GO:1903322 GO:1903506 GO:1903507 GO:1990782 GO:2000112 GO:2000113 GO:2000116 GO:2000117 GO:2001056 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13

Protein Analysis

61

Amino Acids

6.81

Weight (kDa)

10.36

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
BanII	GRGCYC	1 cut(s)	68
BccI	CCATC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	87
CviAII	CATG	2 cut(s)	17, 183
CviJI	RGCY	3 cut(s)	35, 66, 140
CviKI_1	RGCY	3 cut(s)	35, 66, 140
DdeI	CTNAG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	2 cut(s)	20, 186
FaiI	YATR	4 cut(s)	18, 89, 137, 184
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	16, 182
FriOI	GRGCYC	1 cut(s)	68
GsaI	CCCAGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	20, 186
HinfI	GANTC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	50, 76
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	20, 186
LpnPI	CCDG	1 cut(s)	6
MboII	GAAGA	4 cut(s)	108, 111, 142, 169
MhlI	GDGCHC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	55, 168
NlaIII	CATG	2 cut(s)	20, 186
NspI	RCATGY	1 cut(s)	20
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	2 cut(s)	81, 142
SfcI	CTRYAG	1 cut(s)	87
SgeI	CNNG	2 cut(s)	29, 33
TspDTI	ATGAA	1 cut(s)	162
XceI	RCATGY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.