Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Reverse (-)

43497980 .. 43503363

Gene Structure 5384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAAGCGACGGTAGGCCATGTCCATGGCGCCTTTTCAATATCAAGAGCGACGGAGTATCAAACGTGGTCGCTAACACAGCTCAAAATGCGGAAACTGGGCAATCTGATGTTCCATCATCATCTGCTCCTACTAATGTTGTTGCATCTTCATCATCTTCACAGCATCACAATGTGATTCTTGTAAGTGACAGACAGGTCCATCAAGGTGCATTTGGTTCTGTTGGTGATGATCAGTCACTTCTTACTTGGTATCTCTGGGACAACATCAGTGTTTATGTTGGTGTAGAAGAGGACGGAAGCACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTCAAAGGATGATCTTGGATATGTTTGCCGCATCTGTGGGGTTATTGATAGAGGAATTTATACGATATTTGAGTTTCAGTATAACAAGGGTAAGATATACTTTGAGCTTATGGGAGAGGAAAGCATCAAGAGAGACAGAGTGGTGGAGAAAGAGGTAGAAACAAAGAAGAACATAGCTATCAATGAAGCAAAGAACAATACCAATGCGGTTGATCTTATGGAGCAAAAACTGATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

4.47

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	3 cut(s)	92, 391, 569
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	40, 366
AluBI	AGCT	3 cut(s)	83, 469, 539
AluI	AGCT	3 cut(s)	83, 469, 539
Alw26I	GTCTC	1 cut(s)	489
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	30
BccI	CCATC	4 cut(s)	124, 210, 311, 331
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	5 cut(s)	155, 175, 319, 402, 495
BmuI	ACTGGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	342, 376
BseNI	ACTGG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	232, 373, 574
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	3 cut(s)	92, 391, 569
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	3 cut(s)	232, 373, 574
BssNI	GRCGYC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	342, 376
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	235, 376, 577
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	3 cut(s)	232, 373, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 89
BstXI	CCANNNNNNTGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	342, 376
BtsIMutI	CAGTG	2 cut(s)	277, 303
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	199
CviAII	CATG	3 cut(s)	21, 27, 333
CviJI	RGCY	4 cut(s)	19, 83, 469, 539
CviKI_1	RGCY	4 cut(s)	19, 83, 469, 539
DinI	GGCGCC	1 cut(s)	32
DpnI	GATC	3 cut(s)	234, 375, 576
DpnII	GATC	3 cut(s)	232, 373, 574
DraIII	CACNNNGTG	1 cut(s)	175
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	32
EheI	GGCGCC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	24, 30, 336
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	3 cut(s)	20, 26, 332
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	2 cut(s)	349, 383
Fsp4HI	GCNGC	1 cut(s)	391
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	24, 30, 336
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	178, 359
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	46, 490
Hpy99I	CGWCG	2 cut(s)	14, 56
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	146, 212, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 89
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	24, 30, 336
HspAI	GCGC	1 cut(s)	31
KasI	GGCGCC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	232, 373, 574
LmnI	GCTCC	2 cut(s)	133, 583
LpnPI	CCDG	3 cut(s)	84, 182, 244
LweI	GCATC	5 cut(s)	155, 175, 319, 402, 495
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	188, 237
MalI	GATC	3 cut(s)	234, 375, 576
MboI	GATC	3 cut(s)	232, 373, 574
MboII	GAAGA	6 cut(s)	141, 150, 302, 320, 354, 541
MluCI	AATT	1 cut(s)	417
Mly113I	GGCGCC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	286, 407, 472, 508
Mph1103I	ATGCAT	1 cut(s)	334
MslI	CAYNNNNRTG	3 cut(s)	25, 171, 207
MwoI	GCNNNNNNNGC	2 cut(s)	80, 89
NarI	GGCGCC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	232, 373, 574
NlaIII	CATG	3 cut(s)	24, 30, 336
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	188, 237
NsiI	ATGCAT	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	178, 359
PkrI	GCNGC	1 cut(s)	392
PluTI	GGCGCC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	199
RseI	CAYNNNNRTG	3 cut(s)	25, 171, 207
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	3 cut(s)	232, 373, 574
Sau96I	GGNCC	1 cut(s)	199
SetI	ASST	7 cut(s)	69, 85, 201, 211, 471, 519, 541
SfaNI	GCATC	5 cut(s)	155, 175, 319, 402, 495
SfoI	GGCGCC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	25, 171, 207
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	3 cut(s)	92, 391, 569
SspDI	GGCGCC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	69
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	178, 359
TscAI	CASTG	2 cut(s)	277, 310
TseFI	GTSAC	2 cut(s)	188, 237
Tsp45I	GTSAC	2 cut(s)	188, 237
TspDTI	ATGAA	2 cut(s)	141, 561
TspGWI	ACGGA	2 cut(s)	69, 312
TspRI	CASTG	2 cut(s)	277, 310
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.