Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

43383236 .. 43383939

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTTCACTCTACCGCCGTTCACTACCACCGTAAACGGCGCCGCTTTGGGATGAGAGCTCTCAAAGATGTGTATACTAAACCCTCCACCTCCGCAGCTACGACAACACTTAAATGGGTCACCTGGTGCTGCCCCGACATTCCCAGAAGCCATGTTCAGAAGCTCTTTCGCTTAAGACAGGTGGGGCCTAAAGACTTGATGAACTTAGAAGATCGAATATATCTTCCTATTTTTGTGAAACAGTTCCCCGATGATAAACAAGAAGAGGGACATTGTAGTGAAGAAGAAGTCAAGTTTATTCGTAGCCTTGTGTTGTATAAGGATCCAGCTATTGTCGTCTTCAATAAACCCCTGGATTGCTTGTTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

123

Amino Acids

14.56

Weight (kDa)

9.54

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	3 cut(s)	15, 43, 93
AclWI	GGATC	2 cut(s)	317, 330
AcyI	GRCGYC	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	122, 351
AluBI	AGCT	4 cut(s)	59, 98, 163, 329
AluI	AGCT	4 cut(s)	59, 98, 163, 329
Alw21I	GWGCWC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	317, 330
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	95, 129
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	107, 116
BceAI	ACGGC	2 cut(s)	2, 53
BciT130I	CCWGG	2 cut(s)	124, 353
BfoI	RGCGCY	1 cut(s)	43
BfrI	CTTAAG	1 cut(s)	172
BisI	GCNGC	3 cut(s)	43, 96, 130
BlsI	GCNGC	3 cut(s)	44, 97, 131
Bme1390I	CCNGG	2 cut(s)	124, 353
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	41, 186, 324
BmrFI	CCNGG	2 cut(s)	124, 353
BpiI	GAAGAC	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	124, 353
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	107, 116
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	211, 322
BspACI	CCGC	3 cut(s)	15, 43, 93
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	3 cut(s)	41, 186, 324
BspPI	GGATC	2 cut(s)	317, 330
BspT107I	GGYRCC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	211, 322
BssNAI	GTATAC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	124, 353
Bst4CI	ACNGT	2 cut(s)	32, 243
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	40
BstAFI	CTTAAG	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	214, 325
BstMBI	GATC	2 cut(s)	211, 322
BstNI	CCWGG	2 cut(s)	124, 353
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	122, 351
BstV1I	GCAGC	2 cut(s)	107, 116
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BstZ17I	GTATAC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	122
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	7 cut(s)	59, 98, 150, 163, 187, 306, 329
CviKI_1	RGCY	7 cut(s)	59, 98, 150, 163, 187, 306, 329
DdeI	CTNAG	1 cut(s)	205
DinI	GGCGCC	1 cut(s)	41
DpnI	GATC	2 cut(s)	213, 324
DpnII	GATC	2 cut(s)	211, 322
DraIII	CACNNNGTG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	122, 351
EcoT38I	GRGCYC	1 cut(s)	61
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	75, 153, 220, 318
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	43, 96, 130
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	43, 96, 130
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	43, 96, 130
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	4 cut(s)	7, 22, 35, 75
Hpy188I	TCNGA	1 cut(s)	159
Hpy8I	GTNNAC	4 cut(s)	7, 22, 35, 75
HpyCH4III	ACNGT	2 cut(s)	32, 243
HpyF3I	CTNAG	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	40
KasI	GGCGCC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	211, 322
LpnPI	CCDG	7 cut(s)	109, 136, 157, 164, 338, 339, 365
Lsp1109I	GCAGC	2 cut(s)	107, 116
MabI	ACCWGGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	213, 324
MboI	GATC	2 cut(s)	211, 322
MboII	GAAGA	6 cut(s)	215, 221, 275, 293, 296, 331
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	61
Mly113I	GGCGCC	1 cut(s)	40
MnlI	CCTC	3 cut(s)	94, 100, 259
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	111, 173
MslI	CAYNNNNRTG	2 cut(s)	112, 276
MspCI	CTTAAG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	124, 353
MvaI	CCWGG	2 cut(s)	124, 353
NarI	GGCGCC	1 cut(s)	40
NdeII	GATC	2 cut(s)	211, 322
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	41, 186, 324
NmuCI	GTSAC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	44, 97, 131
PluTI	GGCGCC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	122, 351
PspEI	GGTNACC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	122, 351
PspN4I	GGNNCC	3 cut(s)	41, 186, 324
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	112, 276
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	111, 173
SatI	GCNGC	3 cut(s)	43, 96, 130
Sau3AI	GATC	2 cut(s)	211, 322
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	124, 353
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	8 cut(s)	61, 92, 100, 125, 165, 183, 331, 371
SexAI	ACCWGGT	1 cut(s)	122
SfoI	GGCGCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	112, 276
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SsiI	CCGC	3 cut(s)	15, 43, 93
SspDI	GGCGCC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	122, 351
TaaI	ACNGT	2 cut(s)	32, 243
TaqI	TCGA	1 cut(s)	214
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	111, 173
Tru9I	TTAA	2 cut(s)	111, 173
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	95, 129
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.