RNA pseudouridine synthase 4
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19440 AT3G19440 |
| fragaria_vesca | FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 |
| malus_domestica | MD10G1097600.v1.1 |
| prunus_persica | Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 |
| pyrus_communis | pycom01g14220 pycom10g08370 |
| rosa_chinensis | RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041 |
| rosa_laevigata | RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684 |
| rosa_multiflora | Rmu_ssc0000011.1_g000078 |
| rosa_roxburghii | Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260 |
| rosa_rugosa | Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500 |
| rosa_samantha | Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500 |
| rosa_wichuraiana | Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 26 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AcsI | RAATTY | 1 cut(s) | 208 |
| AjnI | CCWGG | 1 cut(s) | 165 |
| AluBI | AGCT | 1 cut(s) | 220 |
| AluI | AGCT | 1 cut(s) | 220 |
| AlwI | GGATC | 1 cut(s) | 188 |
| ApoI | RAATTY | 1 cut(s) | 208 |
| AsuII | TTCGAA | 1 cut(s) | 38 |
| BauI | CACGAG | 1 cut(s) | 101 |
| BccI | CCATC | 1 cut(s) | 47 |
| BciT130I | CCWGG | 1 cut(s) | 167 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| Bme1390I | CCNGG | 1 cut(s) | 167 |
| BmiI | GGNNCC | 1 cut(s) | 164 |
| BmrFI | CCNGG | 1 cut(s) | 167 |
| BpmI | CTGGAG | 2 cut(s) | 181, 188 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| Bpu14I | TTCGAA | 1 cut(s) | 38 |
| BseBI | CCWGG | 1 cut(s) | 167 |
| BslFI | GGGAC | 1 cut(s) | 91 |
| BsmFI | GGGAC | 1 cut(s) | 91 |
| Bsp119I | TTCGAA | 1 cut(s) | 38 |
| Bsp143I | GATC | 2 cut(s) | 193, 240 |
| BspACI | CCGC | 1 cut(s) | 26 |
| BspLI | GGNNCC | 1 cut(s) | 164 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BspT104I | TTCGAA | 1 cut(s) | 38 |
| BssMI | GATC | 2 cut(s) | 193, 240 |
| BssSI | CACGAG | 1 cut(s) | 101 |
| Bst2BI | CACGAG | 1 cut(s) | 101 |
| Bst2UI | CCWGG | 1 cut(s) | 167 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 85 |
| BstBI | TTCGAA | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 2 cut(s) | 77, 218 |
| BstDEI | CTNAG | 2 cut(s) | 30, 46 |
| BstKTI | GATC | 2 cut(s) | 196, 243 |
| BstMBI | GATC | 2 cut(s) | 193, 240 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 85 |
| BstNI | CCWGG | 1 cut(s) | 167 |
| BstSCI | CCNGG | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 2 cut(s) | 77, 218 |
| CviJI | RGCY | 4 cut(s) | 29, 165, 216, 220 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 165, 216, 220 |
| DdeI | CTNAG | 2 cut(s) | 30, 46 |
| DpnI | GATC | 2 cut(s) | 195, 242 |
| DpnII | GATC | 2 cut(s) | 193, 240 |
| EcoRII | CCWGG | 1 cut(s) | 165 |
| FaiI | YATR | 5 cut(s) | 15, 177, 206, 237, 239 |
| FaqI | GGGAC | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 27 |
| GsuI | CTGGAG | 2 cut(s) | 181, 188 |
| HinfI | GANTC | 3 cut(s) | 35, 104, 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 160 |
| HpyAV | CCTTC | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 1 cut(s) | 79 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 85 |
| HpyF3I | CTNAG | 2 cut(s) | 30, 46 |
| Kzo9I | GATC | 2 cut(s) | 193, 240 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| LpnPI | CCDG | 6 cut(s) | 102, 145, 152, 179, 211, 230 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MalI | GATC | 2 cut(s) | 195, 242 |
| MboI | GATC | 2 cut(s) | 193, 240 |
| MboII | GAAGA | 3 cut(s) | 52, 152, 155 |
| MluCI | AATT | 2 cut(s) | 9, 208 |
| MlyI | GAGTC | 2 cut(s) | 113, 136 |
| MnlI | CCTC | 1 cut(s) | 172 |
| MseI | TTAA | 2 cut(s) | 8, 186 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspR9I | CCNGG | 1 cut(s) | 167 |
| MvaI | CCWGG | 1 cut(s) | 167 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 85 |
| NdeII | GATC | 2 cut(s) | 193, 240 |
| NlaIV | GGNNCC | 1 cut(s) | 164 |
| NspV | TTCGAA | 1 cut(s) | 38 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PleI | GAGTC | 2 cut(s) | 112, 135 |
| PpsI | GAGTC | 2 cut(s) | 112, 135 |
| Psp6I | CCWGG | 1 cut(s) | 165 |
| PspGI | CCWGG | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 1 cut(s) | 164 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SaqAI | TTAA | 2 cut(s) | 8, 186 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau3AI | GATC | 2 cut(s) | 193, 240 |
| SchI | GAGTC | 2 cut(s) | 113, 136 |
| ScrFI | CCNGG | 1 cut(s) | 167 |
| SetI | ASST | 3 cut(s) | 24, 183, 222 |
| SfuI | TTCGAA | 1 cut(s) | 38 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| Sse9I | AATT | 2 cut(s) | 9, 208 |
| SsiI | CCGC | 1 cut(s) | 26 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 165 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TasI | AATT | 2 cut(s) | 9, 208 |
| TauI | GCSGC | 1 cut(s) | 29 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 2 cut(s) | 8, 186 |
| Tru9I | TTAA | 2 cut(s) | 8, 186 |
| TspDTI | ATGAA | 1 cut(s) | 132 |
| XapI | RAATTY | 1 cut(s) | 208 |
| XspI | CTAG | 1 cut(s) | 122 |