No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19440 AT3G19440 |
| fragaria_vesca | FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 |
| malus_domestica | MD10G1097600.v1.1 |
| prunus_persica | Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 |
| pyrus_communis | pycom01g14220 pycom10g08370 |
| rosa_chinensis | RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041 |
| rosa_laevigata | RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684 |
| rosa_multiflora | Rmu_ssc0000011.1_g000078 |
| rosa_roxburghii | Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260 |
| rosa_rugosa | Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500 |
| rosa_samantha | Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500 |
| rosa_wichuraiana | Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 134, 260 |
| AcsI | RAATTY | 1 cut(s) | 266 |
| AfaI | GTAC | 1 cut(s) | 58 |
| AgsI | TTSAA | 2 cut(s) | 142, 266 |
| AluBI | AGCT | 1 cut(s) | 230 |
| AluI | AGCT | 1 cut(s) | 230 |
| Alw26I | GTCTC | 3 cut(s) | 89, 116, 181 |
| Ama87I | CYCGRG | 2 cut(s) | 27, 52 |
| ApoI | RAATTY | 1 cut(s) | 266 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AvaI | CYCGRG | 2 cut(s) | 27, 52 |
| AvaII | GGWCC | 1 cut(s) | 169 |
| BccI | CCATC | 1 cut(s) | 139 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 25, 59 |
| BcoDI | GTCTC | 3 cut(s) | 89, 116, 181 |
| BfmI | CTRYAG | 1 cut(s) | 180 |
| Bme18I | GGWCC | 1 cut(s) | 169 |
| BmeT110I | CYCGRG | 2 cut(s) | 27, 52 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BmsI | GCATC | 1 cut(s) | 80 |
| BsaAI | YACGTR | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 1 cut(s) | 28 |
| BsaWI | WCCGGW | 1 cut(s) | 80 |
| Bse1I | ACTGG | 1 cut(s) | 20 |
| BseDI | CCNNGG | 1 cut(s) | 28 |
| BseNI | ACTGG | 1 cut(s) | 20 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BsiHKCI | CYCGRG | 2 cut(s) | 27, 52 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BsmAI | GTCTC | 3 cut(s) | 89, 116, 181 |
| BsmBI | CGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 2 cut(s) | 27, 52 |
| BspACI | CCGC | 2 cut(s) | 134, 260 |
| BsrI | ACTGG | 1 cut(s) | 20 |
| BssECI | CCNNGG | 1 cut(s) | 28 |
| Bst4CI | ACNGT | 1 cut(s) | 291 |
| Bst6I | CTCTTC | 1 cut(s) | 187 |
| BstBAI | YACGTR | 1 cut(s) | 60 |
| BstDEI | CTNAG | 1 cut(s) | 11 |
| BstMAI | GTCTC | 3 cut(s) | 89, 116, 181 |
| BstSFI | CTRYAG | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| Csp6I | GTAC | 1 cut(s) | 57 |
| CviJI | RGCY | 1 cut(s) | 230 |
| CviKI_1 | RGCY | 1 cut(s) | 230 |
| CviQI | GTAC | 1 cut(s) | 57 |
| DdeI | CTNAG | 1 cut(s) | 11 |
| Eam1104I | CTCTTC | 1 cut(s) | 187 |
| EarI | CTCTTC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 1 cut(s) | 169 |
| Eco88I | CYCGRG | 2 cut(s) | 27, 52 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| Esp3I | CGTCTC | 1 cut(s) | 181 |
| FaiI | YATR | 4 cut(s) | 131, 182, 227, 272 |
| HapII | CCGG | 1 cut(s) | 81 |
| HinfI | GANTC | 4 cut(s) | 16, 48, 90, 97 |
| HpaII | CCGG | 1 cut(s) | 81 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 1 cut(s) | 7 |
| Hpy188III | TCNNGA | 2 cut(s) | 52, 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 291 |
| HpyCH4IV | ACGT | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 1 cut(s) | 11 |
| HpySE526I | ACGT | 1 cut(s) | 59 |
| LmnI | GCTCC | 1 cut(s) | 274 |
| LpnPI | CCDG | 3 cut(s) | 33, 94, 152 |
| LweI | GCATC | 1 cut(s) | 80 |
| MaeII | ACGT | 1 cut(s) | 59 |
| MaeIII | GTNAC | 2 cut(s) | 22, 113 |
| MboII | GAAGA | 4 cut(s) | 154, 163, 204, 259 |
| MluCI | AATT | 1 cut(s) | 266 |
| MlyI | GAGTC | 3 cut(s) | 10, 42, 91 |
| MnlI | CCTC | 4 cut(s) | 23, 113, 190, 202 |
| MspI | CCGG | 1 cut(s) | 81 |
| PaeR7I | CTCGAG | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| PleI | GAGTC | 3 cut(s) | 10, 42, 91 |
| PpsI | GAGTC | 3 cut(s) | 10, 42, 91 |
| Ppu21I | YACGTR | 1 cut(s) | 60 |
| PpuMI | RGGWCCY | 1 cut(s) | 169 |
| Psp5II | RGGWCCY | 1 cut(s) | 169 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PspPPI | RGGWCCY | 1 cut(s) | 169 |
| RsaI | GTAC | 1 cut(s) | 58 |
| RsaNI | GTAC | 1 cut(s) | 57 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| SchI | GAGTC | 3 cut(s) | 10, 42, 91 |
| SetI | ASST | 6 cut(s) | 43, 62, 174, 201, 213, 232 |
| SfaNI | GCATC | 1 cut(s) | 80 |
| SfcI | CTRYAG | 1 cut(s) | 180 |
| Sfr274I | CTCGAG | 1 cut(s) | 52 |
| SinI | GGWCC | 1 cut(s) | 169 |
| SlaI | CTCGAG | 1 cut(s) | 52 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| Sse9I | AATT | 1 cut(s) | 266 |
| SsiI | CCGC | 2 cut(s) | 134, 260 |
| TaaI | ACNGT | 1 cut(s) | 291 |
| TaiI | ACGT | 1 cut(s) | 62 |
| TaqI | TCGA | 2 cut(s) | 53, 93 |
| TasI | AATT | 1 cut(s) | 266 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 169 |
| XapI | RAATTY | 1 cut(s) | 266 |
| XhoI | CTCGAG | 1 cut(s) | 52 |