Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

27661023 .. 27664187

Gene Structure 3165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTGCAGTGGGCCTTGGCCCTGTATACCTTGTTTCTTTAGGTTGTTACAATGTGTCCACGGAAAAGAAAAGAAAAATTGCGTCAACAGGTTGTACAAGGGGAAAGGGAAAGCTGCTTGGTCTTCCTCGAAACGAAACAACGAGAGCCTCCCGAGTCCAGAGTCCAGAGTCCGTCCAGCCATCGATCAACCTCAAACTAAACCCACCCTCCTTTCTCTTCCTCTCCCTCTCCGCAGGTGCCAGCGCCAAAATGGGACAAGAGGCAACTGCACTTGAGGATTCTCCAGTTGAGTCCTTGCTGCAGGCTGCAAGATATGATGACATGGAAGTCATTACGTCCTTAGTATCCGATGGTGTTTCTCTTGATTCTAAGGATTCCCAAGGCCGAACAGCACTACACATGGCTTCTGCTAATGGTCATCTTGACATTGTGGAGTATCTTATCAGTAGAGGAGTGGATCTTAATGCTTCAAATGCGGAGATGAATACACCCCTACATTGGGCCTGCCTGAATGGACATGTCGAGGTGGTTAAGAAATTGATCTTGGCGGGAGCTAATGTAGCTGTACTAAACAGCTATGAGAAGAGCCCAATTGATGAAGCTTTGAGTGGGCAAAAGATGGATGTTATTGATGCCATTAATGAATCAGTGGCCCAAGTAGAGCTTACTGGCATCAGAGTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

229

Amino Acids

24.25

Weight (kDa)

5.6

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_4	PF13637	100 - 149	2.1e-11	Ankyrin repeats (many copies)
Ank_2	PF12796	100 - 189	1.8e-20	Ankyrin repeats (3 copies)
Ank_5	PF13857	115 - 167	1.7e-11	Ankyrin repeats (many copies)
Ank	PF00023	128 - 159	1.4e-09	Ankyrin repeat
Ank_3	PF13606	129 - 157	2.8e-07	Ankyrin repeat
Ank_4	PF13637	139 - 182	3.2e-12	Ankyrin repeats (many copies)
Ank	PF00023	163 - 192	2.6e-08	Ankyrin repeat
Ank_3	PF13606	163 - 189	2.6e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	3 cut(s)	234, 479, 551
AclWI	GGATC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	97, 570
AfiI	CCNNNNNNNGG	2 cut(s)	501, 502
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	6 cut(s)	115, 557, 566, 579, 605, 667
AluI	AGCT	6 cut(s)	115, 557, 566, 579, 605, 667
AlwI	GGATC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	5 cut(s)	13, 19, 385, 504, 654
ApeKI	GCWGC	3 cut(s)	115, 301, 308
AseI	ATTAAT	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	13, 20, 504, 655
AvaI	CYCGRG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	102, 288, 295
BccI	CCATC	3 cut(s)	190, 347, 616
BciVI	GTATCC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	688
BfmI	CTRYAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	116, 302, 309
BlsI	GCNGC	3 cut(s)	117, 303, 310
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	4 cut(s)	13, 20, 504, 655
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	2 cut(s)	625, 684
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	16, 60, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 502
Bse1I	ACTGG	2 cut(s)	287, 676
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	16, 60, 382
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	501, 502
BseNI	ACTGG	2 cut(s)	287, 676
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	3 cut(s)	102, 288, 295
BsgI	GTGCAG	2 cut(s)	27, 255
BshFI	GGCC	5 cut(s)	15, 21, 387, 506, 656
BshNI	GGYRCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	501, 502
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	5 cut(s)	15, 21, 387, 506, 656
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	186, 460, 543
BspACI	CCGC	3 cut(s)	234, 479, 551
BspANI	GGCC	5 cut(s)	15, 21, 387, 506, 656
BspDI	ATCGAT	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	287, 676
BssECI	CCNNGG	3 cut(s)	16, 60, 382
BssMI	GATC	3 cut(s)	186, 460, 543
BssNAI	GTATAC	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	16, 382
Bst1107I	GTATAC	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	224, 581
BstAUI	TGTACA	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	244, 306, 508
BstDEI	CTNAG	2 cut(s)	343, 372
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	189, 463, 546
BstMBI	GATC	3 cut(s)	186, 460, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 563
BstNSI	RCATGY	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	102, 288, 295
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BstZ17I	GTATAC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	5 cut(s)	15, 21, 387, 506, 656
BsuTUI	ATCGAT	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 657
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	244, 306, 508
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	13, 20, 504, 655
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	96, 569
CviAII	CATG	3 cut(s)	325, 403, 521
CviQI	GTAC	2 cut(s)	96, 569
DdeI	CTNAG	2 cut(s)	343, 372
DpnI	GATC	3 cut(s)	188, 462, 545
DpnII	GATC	3 cut(s)	186, 460, 543
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	2 cut(s)	224, 581
EarI	CTCTTC	2 cut(s)	224, 581
Eco130I	CCWWGG	2 cut(s)	16, 382
Eco24I	GRGCYC	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	16, 382
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	16, 382
FaeI	CATG	3 cut(s)	328, 406, 524
FaiI	YATR	6 cut(s)	28, 318, 326, 404, 522, 582
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	3 cut(s)	324, 402, 520
FauI	CCCGC	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	116, 302, 309
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	3 cut(s)	116, 302, 309
FspBI	CTAG	1 cut(s)	688
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	116, 302, 309
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	5 cut(s)	15, 21, 387, 506, 656
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	328, 406, 524
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	9 cut(s)	156, 163, 170, 281, 293, 368, 377, 647, 681
Hpy166II	GTNNAC	3 cut(s)	28, 60, 87
Hpy188I	TCNGA	2 cut(s)	352, 680
Hpy188III	TCNNGA	5 cut(s)	153, 160, 167, 365, 425
Hpy8I	GTNNAC	3 cut(s)	28, 60, 87
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	8, 272, 304, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 563
HpyF3I	CTNAG	2 cut(s)	343, 372
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	328, 406, 524
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	186, 460, 543
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	3 cut(s)	102, 288, 295
LweI	GCATC	2 cut(s)	625, 684
MaeI	CTAG	1 cut(s)	688
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	188, 462, 545
MboI	GATC	3 cut(s)	186, 460, 543
MboII	GAAGA	3 cut(s)	116, 211, 598
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	3 cut(s)	78, 539, 594
MlyI	GAGTC	5 cut(s)	165, 172, 179, 302, 690
MseI	TTAA	3 cut(s)	465, 534, 642
MunI	CAATTG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	476, 563
NdeII	GATC	3 cut(s)	186, 460, 543
NlaIII	CATG	3 cut(s)	328, 406, 524
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	227
PciI	ACATGT	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	281, 368, 377, 647
PkrI	GCNGC	3 cut(s)	117, 303, 310
PleI	GAGTC	5 cut(s)	164, 171, 178, 301, 689
PpsI	GAGTC	5 cut(s)	164, 171, 178, 301, 689
PscI	ACATGT	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	4 cut(s)	13, 20, 504, 655
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	97, 570
RsaNI	GTAC	2 cut(s)	96, 569
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	465, 534, 642
SatI	GCNGC	3 cut(s)	116, 302, 309
Sau3AI	GATC	3 cut(s)	186, 460, 543
Sau96I	GGNCC	4 cut(s)	13, 20, 504, 655
SchI	GAGTC	5 cut(s)	165, 172, 179, 302, 690
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	2 cut(s)	625, 684
SfcI	CTRYAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	78, 539, 594
SsiI	CCGC	3 cut(s)	234, 479, 551
SspMI	CTAG	1 cut(s)	688
StyI	CCWWGG	2 cut(s)	16, 382
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	130, 185, 525
TasI	AATT	3 cut(s)	78, 539, 594
TatI	WGTACW	2 cut(s)	95, 568
TfiI	GAWTC	4 cut(s)	281, 368, 377, 647
Tru1I	TTAA	3 cut(s)	465, 534, 642
Tru9I	TTAA	3 cut(s)	465, 534, 642
TscAI	CASTG	2 cut(s)	15, 657
TseI	GCWGC	3 cut(s)	115, 301, 308
TspDTI	ATGAA	3 cut(s)	500, 615, 660
TspGWI	ACGGA	2 cut(s)	77, 163
TspRI	CASTG	2 cut(s)	15, 657
VspI	ATTAAT	1 cut(s)	642
XceI	RCATGY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.