Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

57464397 .. 57465348

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGAGCTCTCAGAGATGTGTATACTAAACCCTCCACCTCGTTAGCTACGACGACGCTTAAATGGGTCACCAGGTGCTGCCCCGAGATTGCCAGAAGCCTTGTTCAGAAGCTCTTTCGCTTAAGACAGGTTCGAAGAGAAGGATCTGACATGGATCAATGTGTTAAGGTTTTACTTGGATTTGGGTTTAGGAGCAGGATGACAAGAAGGCCCCTGACTCTGCTGCTAAAGTCAAAGGCGAATCAGCCAAGAAGGGATATGTTGGAATTCACATCTCAGGATTCAGAGATATCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

99

Amino Acids

11.57

Weight (kDa)

10.85

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	151, 162
AcsI	RAATTY	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	8, 47, 112
AluI	AGCT	3 cut(s)	8, 47, 112
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	151, 162
AlwNI	CAGNNNCTG	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	78, 223
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	65, 210
BciT130I	CCWGG	1 cut(s)	73
BfrI	CTTAAG	1 cut(s)	121
BisI	GCNGC	2 cut(s)	79, 224
BlsI	GCNGC	2 cut(s)	80, 225
Bme1390I	CCNGG	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	25, 290
BseXI	GCAGC	2 cut(s)	65, 210
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	143, 154
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	24, 289
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	151, 162
BspT104I	TTCGAA	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	121
BssMI	GATC	2 cut(s)	143, 154
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	11, 276
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	146, 157
BstMBI	GATC	2 cut(s)	143, 154
BstNI	CCWGG	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	65, 210
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BstZ17I	GTATAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	71
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	8, 47, 99, 112, 211, 247
CviKI_1	RGCY	6 cut(s)	8, 47, 99, 112, 211, 247
DdeI	CTNAG	2 cut(s)	11, 276
DpnI	GATC	2 cut(s)	145, 156
DpnII	GATC	2 cut(s)	143, 154
DraIII	CACNNNGTG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	1 cut(s)	154
FaiI	YATR	3 cut(s)	24, 152, 260
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	79, 224
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	79, 224
GluI	GCNGC	2 cut(s)	79, 224
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	3 cut(s)	217, 241, 281
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	14, 108, 148, 286
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	3 cut(s)	134, 201, 246
HpyF3I	CTNAG	2 cut(s)	11, 276
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	143, 154
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	7 cut(s)	58, 85, 106, 113, 181, 227, 263
Lsp1109I	GCAGC	2 cut(s)	65, 210
MabI	ACCWGGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	145, 156
MboI	GATC	2 cut(s)	143, 154
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	43, 49
MseI	TTAA	4 cut(s)	60, 122, 165, 298
MspCI	CTTAAG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	143, 154
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	241, 281
PkrI	GCNGC	2 cut(s)	80, 225
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	4 cut(s)	60, 122, 165, 298
SatI	GCNGC	2 cut(s)	79, 224
Sau3AI	GATC	2 cut(s)	143, 154
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	7 cut(s)	10, 41, 49, 77, 114, 132, 171
SexAI	ACCWGGT	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	241, 281
Tru1I	TTAA	4 cut(s)	60, 122, 165, 298
Tru9I	TTAA	4 cut(s)	60, 122, 165, 298
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	78, 223
Tsp45I	GTSAC	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.