Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

74459663 .. 74461471

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0556400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTCCAAAAGCCTATTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGATATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAAAGTTGTGCCCCTAGCAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGACAAGGTTCAAACCCAAATTAGTTGCAGTTAGTAATGAATATTCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCATTCATAGGGAGCAAGGAGTCATTGAGGTTGCTCGACACCCTGATGCAGTCACAGTAGTTACAGGAATAGTCGGTTGTGCAATACTGAAGGTGTGCAAGAGACCACTTAATAAAAAGGAATTGGCAAAGAATGAGGAAGACATAATAGACACACTTTCCAACTCTGTAACAGTTCATGAGACTAAGCTCAAGGTTGACCTAACAGCATATGTGGAGAAACACGAGTTTGTTTCTGATGCAGTGCTGAATGAGGAAGTGTTTAATGATGAGGCTTTATGCTCAACTTGGAGGGATGAAGGGGCGACCGTCTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

186

Amino Acids

20.32

Weight (kDa)

5.18

Isoelectric Point (pI)

11.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	6 - 113	1.7e-27	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	91, 154
AluBI	AGCT	2 cut(s)	110, 430
AluI	AGCT	2 cut(s)	110, 430
Alw26I	GTCTC	2 cut(s)	337, 416
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	3 cut(s)	234, 387, 544
BbvI	GCAGC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	337, 416
BfaI	CTAG	2 cut(s)	104, 224
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	40, 49
BmsI	GCATC	2 cut(s)	277, 469
BpiI	GAAGAC	3 cut(s)	234, 387, 544
BpuEI	CTTGAG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	549
BsiEI	CGRYCG	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	337, 416
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	29, 136, 240
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	40, 49
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	29, 136, 240
BssSI	CACGAG	1 cut(s)	464
Bst2BI	CACGAG	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	298, 415, 550
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	237, 426
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	3 cut(s)	32, 139, 243
BstMAI	GTCTC	2 cut(s)	337, 416
BstMBI	GATC	3 cut(s)	29, 136, 240
BstMCI	CGRYCG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	3 cut(s)	234, 387, 544
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	7 cut(s)	13, 110, 114, 212, 235, 430, 515
CviKI_1	RGCY	7 cut(s)	13, 110, 114, 212, 235, 430, 515
DdeI	CTNAG	2 cut(s)	237, 426
DpnI	GATC	3 cut(s)	31, 138, 242
DpnII	GATC	3 cut(s)	29, 136, 240
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	350
FaeI	CATG	1 cut(s)	422
FaiI	YATR	6 cut(s)	249, 386, 420, 451, 453, 520
FatI	CATG	1 cut(s)	418
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	104, 224
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	124, 261
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	3 cut(s)	224, 419, 558
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	2 cut(s)	325, 533
HpyCH4III	ACNGT	3 cut(s)	298, 415, 550
HpyCH4V	TGCA	6 cut(s)	71, 170, 290, 323, 339, 482
HpyF3I	CTNAG	2 cut(s)	237, 426
Hsp92II	CATG	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	29, 136, 240
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	21, 65, 96, 125, 204, 249, 291, 297
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	277, 469
MaeI	CTAG	2 cut(s)	104, 224
MaeIII	GTNAC	5 cut(s)	121, 142, 292, 301, 409
MalI	GATC	3 cut(s)	31, 138, 242
MboI	GATC	3 cut(s)	29, 136, 240
MboII	GAAGA	4 cut(s)	119, 239, 392, 544
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	86, 161, 362
MlyI	GAGTC	2 cut(s)	118, 270
MmeI	TCCRAC	2 cut(s)	7, 426
MnlI	CCTC	6 cut(s)	202, 262, 370, 487, 505, 525
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	4 cut(s)	195, 204, 351, 504
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	3 cut(s)	29, 136, 240
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	2 cut(s)	40, 49
NmuCI	GTSAC	3 cut(s)	121, 142, 292
PagI	TCATGA	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	118, 269
PpsI	GAGTC	2 cut(s)	118, 269
PspN4I	GGNNCC	2 cut(s)	40, 49
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	195, 204, 351, 504
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	29, 136, 240
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	118, 270
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	112, 144, 152, 273, 336, 432, 438, 444
SfaNI	GCATC	2 cut(s)	277, 469
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	86, 161, 362
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	104, 224
TaaI	ACNGT	3 cut(s)	298, 415, 550
TaqI	TCGA	1 cut(s)	277
TasI	AATT	3 cut(s)	86, 161, 362
Tru1I	TTAA	4 cut(s)	195, 204, 351, 504
Tru9I	TTAA	4 cut(s)	195, 204, 351, 504
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	3 cut(s)	121, 142, 292
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	3 cut(s)	121, 142, 292
TspDTI	ATGAA	6 cut(s)	177, 195, 213, 236, 407, 552
TspRI	CASTG	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	104, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.