Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

38671055 .. 38673192

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 448 bp

ATGAGAGCTCTCAAAGATGTGTATACTAAACCCTCCACCTCCGCAGCTACGACGACACTTAAATGGGTCACCAGGTTTGAAGAGATCGATGCATCTGACATGGATCAATGTGTTCAAGCACTTAAAAGGGTGGGGGCTAAAGACTTGATGAACTTAGAAGATCGAATATGTCTTCCTATTTCTGTGAAACAGTTCCCTGATGATAAACAAGAAGAGGGACATTGTAGTGAAGAAGAAGTCAAGTTTATTCGTAGCTTTGTGCTGTATAAGGATCCAGCTATTGTCGTCTTCAATAAACCCCCTGGATTGCCTGTTCAGGGTGGTATTGGAATCAAAAGGAGTTTACATGAACTGGCTGCCACTTGTTTAAGTTACAGCTTTTCAGAACCCCCTCGTCTGGTATGCTTGCTCAATTTCTCTGGTCAAATTTTTGGGGATTCGTTTGGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

5.71

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	3 cut(s)	111, 266, 279
AcsI	RAATTY	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	317, 397
AgsI	TTSAA	3 cut(s)	80, 116, 292
AjnI	CCWGG	2 cut(s)	71, 301
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	5 cut(s)	8, 47, 255, 278, 378
AluI	AGCT	5 cut(s)	8, 47, 255, 278, 378
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	111, 266, 279
ApeKI	GCWGC	2 cut(s)	44, 356
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	2 cut(s)	164, 280
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	56, 343
BciT130I	CCWGG	2 cut(s)	73, 303
BisI	GCNGC	2 cut(s)	45, 357
BlsI	GCNGC	2 cut(s)	46, 358
Bme1390I	CCNGG	2 cut(s)	73, 303
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	73, 303
BmsI	GCATC	2 cut(s)	79, 101
BpiI	GAAGAC	2 cut(s)	164, 280
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 397
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	73, 303
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	317, 397
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	56, 343
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	317, 397
BsmFI	GGGAC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	84, 103, 160, 271
BspACI	CCGC	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	3 cut(s)	111, 266, 279
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	84, 103, 160, 271
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	73, 303
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	75, 207
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	87, 106, 163, 274
BstMBI	GATC	4 cut(s)	84, 103, 160, 271
BstNI	CCWGG	2 cut(s)	73, 303
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	71, 301
BstV1I	GCAGC	2 cut(s)	56, 343
BstV2I	GAAGAC	2 cut(s)	164, 280
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	87
CsiI	ACCWGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	100, 347
CviJI	RGCY	7 cut(s)	8, 47, 137, 255, 278, 356, 378
CviKI_1	RGCY	7 cut(s)	8, 47, 137, 255, 278, 356, 378
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	4 cut(s)	86, 105, 162, 273
DpnII	GATC	4 cut(s)	84, 103, 160, 271
Eam1104I	CTCTTC	2 cut(s)	75, 207
EarI	CTCTTC	2 cut(s)	75, 207
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	71, 301
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	103, 350
FaiI	YATR	6 cut(s)	24, 101, 169, 267, 348, 403
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	99, 346
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	45, 357
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	45, 357
GluI	GCNGC	2 cut(s)	45, 357
Hin1II	CATG	2 cut(s)	103, 350
HinfI	GANTC	2 cut(s)	330, 437
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	24, 344
Hpy188I	TCNGA	2 cut(s)	97, 385
Hpy8I	GTNNAC	2 cut(s)	24, 344
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	103, 350
Kzo9I	GATC	4 cut(s)	84, 103, 160, 271
Lsp1109I	GCAGC	2 cut(s)	56, 343
LweI	GCATC	2 cut(s)	79, 101
MabI	ACCWGGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	67, 371
MalI	GATC	4 cut(s)	86, 105, 162, 273
MboI	GATC	4 cut(s)	84, 103, 160, 271
MboII	GAAGA	7 cut(s)	92, 164, 170, 224, 242, 245, 280
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	412, 426
MnlI	CCTC	4 cut(s)	43, 49, 208, 402
Mph1103I	ATGCAT	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	3 cut(s)	60, 123, 368
MslI	CAYNNNNRTG	2 cut(s)	61, 225
MspR9I	CCNGG	2 cut(s)	73, 303
MvaI	CCWGG	2 cut(s)	73, 303
NdeII	GATC	4 cut(s)	84, 103, 160, 271
NlaIII	CATG	2 cut(s)	103, 350
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	330, 437
PkrI	GCNGC	2 cut(s)	46, 358
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	71, 301
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	71, 301
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	61, 225
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	60, 123, 368
SatI	GCNGC	2 cut(s)	45, 357
Sau3AI	GATC	4 cut(s)	84, 103, 160, 271
ScrFI	CCNGG	2 cut(s)	73, 303
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	7 cut(s)	10, 41, 49, 77, 257, 280, 380
SexAI	ACCWGGT	1 cut(s)	71
SfaNI	GCATC	2 cut(s)	79, 101
SmiMI	CAYNNNNRTG	2 cut(s)	61, 225
Sse9I	AATT	2 cut(s)	412, 426
SsiI	CCGC	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	71, 301
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	87, 163
TasI	AATT	2 cut(s)	412, 426
TfiI	GAWTC	2 cut(s)	330, 437
Tru1I	TTAA	3 cut(s)	60, 123, 368
Tru9I	TTAA	3 cut(s)	60, 123, 368
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	44, 356
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	164, 363
XapI	RAATTY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.