Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001594

Physical Location & Seq

Genomic Coordinates Forward (+)

38286506 .. 38287978

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTAGGGAAACTAGGCAATCTGATGTTCCATCATCATCTGCTCCTACCAATGCTGTTGCATCTTCATCATCTTCACAGCATCACAATGCGATTCTTGTGAGTGTTTATGTTGGTGTAGAAGACGACGGAAGCACTGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTTAAAGGGTAAGATATACTTTGAGCTAATGGGAGAGGAAAGCATCAAGAGAGACAGAGTGGTGGAGAAAGAGGTAGAAACAAAGGACATAGCTATCAATGAAGCAAAGAACAATACCAATGCGGTTGATCTTATGGAGCAAAAACTAATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

117

Amino Acids

12.75

Weight (kDa)

4.41

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19440 AT3G19440
fragaria_vesca	FvH4_2g05120 FvH4_2g05120 FvH4_2g05120 FvH4_2g05120
malus_domestica	MD10G1097600.v1.1
prunus_persica	Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1 Prupe.8G135400_v2.0.a1
pyrus_communis	pycom01g14220 pycom10g08370
rosa_chinensis	RchiOBHm_Chr4g0415551 RchiOBHm_Chr6g0255041
rosa_laevigata	RLG00000003460 RLG00000014859 RLG00000014868 RLG00000018864 RLG00000024043 RLG00000027684
rosa_multiflora	Rmu_ssc0000011.1_g000078
rosa_roxburghii	Rroxscaffold_2G00121110 Rroxscaffold_6G00396470 Rroxscaffold_6G00402590 Rroxscaffold_7G00210260
rosa_rugosa	Rorug03G0278700 Rorug03G0278800 Rorug03G0278900 Rorug05G0556400 Rorug05G0556500
rosa_samantha	Rh1AG091300 Rh1AG167900 Rh1DG094800 Rh2BG117700 Rh2BG330200 Rh2DG118600 Rh3BG349000 Rh4CG206700 Rh5BG449900 Rh6AG035800 Rh6AG073700 Rh6BG065900 Rh6BG066100 Rh6BG131700 Rh7AG357100 Rh7CG374500
rosa_wichuraiana	Rw2G034900 Rw6G006400 Rw6G006410 Rw6G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	220, 287
AluI	AGCT	2 cut(s)	220, 287
Alw26I	GTCTC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	129
BccI	CCATC	3 cut(s)	40, 143, 163
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	15
BmsI	GCATC	4 cut(s)	71, 91, 151, 246
BpiI	GAAGAC	1 cut(s)	129
BseGI	GGATG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	317
BssMI	GATC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	135
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	2 cut(s)	220, 287
CviKI_1	RGCY	2 cut(s)	220, 287
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	1 cut(s)	168
FaiI	YATR	5 cut(s)	111, 166, 211, 284, 329
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	164
FokI	GGATG	1 cut(s)	181
FspBI	CTAG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	168
HinfI	GANTC	2 cut(s)	94, 191
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	62, 164
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	49, 331
LweI	GCATC	4 cut(s)	71, 91, 151, 246
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	4 cut(s)	57, 66, 134, 152
MnlI	CCTC	2 cut(s)	223, 259
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	87
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	94, 191
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	322
SetI	ASST	3 cut(s)	222, 270, 289
SfaNI	GCATC	4 cut(s)	71, 91, 151, 246
SgeI	CNNG	4 cut(s)	27, 110, 177, 253
SmiMI	CAYNNNNRTG	1 cut(s)	87
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	94, 191
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	57, 309
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	142
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.