Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

8453656 .. 8454135

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTCTTCTAGTGGAACATCCTCTGTTTCCTCCATGATTCAAAACTCTGGCTCTGAAGAAGACTTGCAGGCTCTGATGGATCAGAGAAAAAGGAAGAGAATGCTGTCGAACAGGGAGTCTGCAAGAAGGTCTAGGATGAGGAAACAGAAGCACTTGGATGATCTTACGGCGCAGATGGCTCAGCTGAGGAAGGAGAACCACCAGATCGTCAGCAGCCTCAACATCACAAGCCAGCATTACATGAACATTGAGGCAGAAAACTCTGTGCTCAGAGCCCAAGCGGCTGAGCTCAGCAACAGGCTGCAGTCTCTGAATGAGATCATCACTTTCCTGAATGCAAATAATGGTGGTTGTGTTGAGGATTCAAGCAACAACAACAACTTCACTGAGCCTAGTGCTGATTGCTTCTTTAACCCTCTGAATTTTTCATATCTGAACCAGCCCATCATGGCTTCAGCAGAGATGTTTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

6.29

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	28 - 70	1.3e-06	Basic region leucine zipper
bZIP_1	PF00170	30 - 86	2.2e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	78, 441
AfaI	GTAC	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	44, 369
AluBI	AGCT	2 cut(s)	187, 292
AluI	AGCT	2 cut(s)	187, 292
Alw21I	GWGCWC	2 cut(s)	273, 294
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	2 cut(s)	76, 313
ApeKI	GCWGC	2 cut(s)	216, 304
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	280, 294
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	273, 294
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	228, 291
BccI	CCATC	3 cut(s)	73, 172, 455
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	3 cut(s)	12, 135, 396
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	3 cut(s)	217, 285, 305
BlpI	GCTNAGC	3 cut(s)	183, 288, 293
BlsI	GCNGC	3 cut(s)	218, 286, 306
BmcAI	AGTACT	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	3 cut(s)	183, 288, 293
BseGI	GGATG	3 cut(s)	20, 144, 166
BseMII	CTCAG	6 cut(s)	179, 197, 279, 286, 307, 381
BseXI	GCAGC	2 cut(s)	228, 291
BsiHKAI	GWGCWC	2 cut(s)	273, 294
BsmAI	GTCTC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	108, 343
Bsp1286I	GDGCHC	3 cut(s)	273, 280, 294
Bsp143I	GATC	4 cut(s)	82, 163, 207, 321
Bsp1720I	GCTNAGC	3 cut(s)	183, 288, 293
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	6 cut(s)	180, 196, 280, 285, 306, 382
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	90
BssMI	GATC	4 cut(s)	82, 163, 207, 321
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	72, 236
BstDEI	CTNAG	6 cut(s)	183, 188, 272, 288, 293, 390
BstF5I	GGATG	3 cut(s)	20, 144, 166
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	85, 166, 210, 324
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	82, 163, 207, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 284
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	228, 291
BstV2I	GAAGAC	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	20, 144, 166
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	72, 236
CaiI	CAGNNNCTG	2 cut(s)	76, 313
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	3 cut(s)	37, 244, 451
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	6 cut(s)	183, 188, 272, 288, 293, 390
DpnI	GATC	4 cut(s)	84, 165, 209, 323
DpnII	GATC	4 cut(s)	82, 163, 207, 321
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	280, 294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	78, 441
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	2 cut(s)	280, 294
FaeI	CATG	3 cut(s)	40, 247, 454
FaiI	YATR	4 cut(s)	38, 245, 433, 452
FatI	CATG	3 cut(s)	36, 243, 450
Fnu4HI	GCNGC	3 cut(s)	217, 285, 305
FokI	GGATG	3 cut(s)	7, 151, 173
FriOI	GRGCYC	2 cut(s)	280, 294
Fsp4HI	GCNGC	3 cut(s)	217, 285, 305
FspBI	CTAG	3 cut(s)	12, 135, 396
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	217, 285, 305
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	40, 247, 454
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	3 cut(s)	40, 119, 365
Hpy188I	TCNGA	7 cut(s)	58, 78, 87, 275, 315, 423, 438
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	123, 187
HpyCH4V	TGCA	4 cut(s)	70, 125, 307, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 284
HpyF3I	CTNAG	6 cut(s)	183, 188, 272, 288, 293, 390
Hsp92II	CATG	3 cut(s)	40, 247, 454
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	82, 163, 207, 321
LpnPI	CCDG	8 cut(s)	36, 56, 100, 218, 248, 286, 347, 455
Lsp1109I	GCAGC	2 cut(s)	228, 291
MaeI	CTAG	3 cut(s)	12, 135, 396
MalI	GATC	4 cut(s)	84, 165, 209, 323
MboI	GATC	4 cut(s)	82, 163, 207, 321
MboII	GAAGA	3 cut(s)	71, 74, 109
MhlI	GDGCHC	3 cut(s)	273, 280, 294
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	34, 43, 135, 183, 230, 247, 355, 429
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	187
Mva1269I	GAATGC	2 cut(s)	108, 343
MwoI	GCNNNNNNNGC	2 cut(s)	179, 284
NdeII	GATC	4 cut(s)	82, 163, 207, 321
NlaIII	CATG	3 cut(s)	40, 247, 454
PctI	GAATGC	2 cut(s)	108, 343
PfeI	GAWTC	2 cut(s)	40, 365
PkrI	GCNGC	3 cut(s)	218, 286, 306
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	2 cut(s)	76, 313
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	217, 285, 305
Sau3AI	GATC	4 cut(s)	82, 163, 207, 321
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	3 cut(s)	273, 280, 294
SetI	ASST	3 cut(s)	134, 189, 294
SfcI	CTRYAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	12, 135, 396
SstI	GAGCTC	1 cut(s)	294
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	424
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	40, 365
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	2 cut(s)	216, 304
TspDTI	ATGAA	2 cut(s)	260, 420
TspRI	CASTG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	424
XspI	CTAG	3 cut(s)	12, 135, 396
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.