Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

11821577 .. 11823172

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCAATACGTACTGAAGTTCTCCTCTCTGGGTTTATGCATCTGCATGGCTACTTCTAGTGGGAACTCATCTGGCTCCAGCGCGCTTCAGATTATGAACTCCGGCTCTGATCAAGAGGGTCTTCATCAGGTCATGGACCAGAGGAAGCGGAAGAGAATGGTATCTAATAGGGAATCGGCGCGCCGGTCTCGGATGCGAAAGCAGGAGCACCTGACTGATCTGACGGCCCAAGTTGGTCTGTTAATGAAAGAGAACAACCAAATCCTTACAAGCATCAATGTCACAAACCAGCTCTACCTGAACCTTGAGGCTGAGAACTGTGTGCTCAGAGCCCAGGTGGCGGAGCTCAGCAACAGGTTGCAGAGTCTGAATGATATTGTGGACTTTATTGACTCGAGCAAGTGGCTTTTGGAGAATGAAGAAGAAGACTTGAGTGCTCAGTTTGGTGGTGATGGGTTTCTTAATCCATGGAGTAATCTCTGCTTCAATCAACCCGTTGACACGTTCATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

172

Amino Acids

19.29

Weight (kDa)

5.2

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	46 - 92	1.2e-07	Basic region leucine zipper
bZIP_1	PF00170	48 - 105	4.1e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 181
AciI	CCGC	2 cut(s)	148, 341
AcuI	CTGAAG	2 cut(s)	35, 71
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	292, 346
AluI	AGCT	2 cut(s)	292, 346
Alw21I	GWGCWC	4 cut(s)	210, 327, 348, 439
Alw26I	GTCTC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	225
AscI	GGCGCGCC	1 cut(s)	179
AspLEI	GCGC	4 cut(s)	83, 85, 181, 183
AspS9I	GGNCC	2 cut(s)	136, 226
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	334, 348
BbsI	GAAGAC	2 cut(s)	113, 432
Bbv12I	GWGCWC	4 cut(s)	210, 327, 348, 439
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	136, 226
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	3 cut(s)	48, 183, 282
BpiI	GAAGAC	2 cut(s)	113, 432
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	326, 451
BsaAI	YACGTR	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	333, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	333, 467
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	4 cut(s)	303, 340, 361, 452
BsePI	GCGCGC	2 cut(s)	81, 179
BseRI	GAGGAG	1 cut(s)	13
Bsh1236I	CGCG	2 cut(s)	83, 181
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	4 cut(s)	210, 327, 348, 439
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	102, 184
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	5 cut(s)	210, 327, 334, 348, 439
Bsp143I	GATC	2 cut(s)	109, 217
Bsp1720I	GCTNAGC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	2 cut(s)	148, 341
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	4 cut(s)	304, 339, 360, 451
BspFNI	CGCG	2 cut(s)	83, 181
BspLI	GGNNCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	333, 467
BssHII	GCGCGC	2 cut(s)	81, 179
BssMI	GATC	2 cut(s)	109, 217
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	83, 181
BstDEI	CTNAG	4 cut(s)	312, 326, 347, 438
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	83, 181
BstHHI	GCGC	4 cut(s)	83, 85, 181, 183
BstKTI	GATC	2 cut(s)	112, 220
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	109, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	2 cut(s)	83, 181
BstV2I	GAAGAC	2 cut(s)	113, 432
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	83, 181
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	4 cut(s)	83, 85, 181, 183
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	136, 226
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	4 cut(s)	46, 133, 468, 508
CviJI	RGCY	9 cut(s)	50, 75, 105, 227, 292, 311, 332, 346, 406
CviKI_1	RGCY	9 cut(s)	50, 75, 105, 227, 292, 311, 332, 346, 406
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	4 cut(s)	312, 326, 347, 438
DpnI	GATC	2 cut(s)	111, 219
DpnII	GATC	2 cut(s)	109, 217
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	2 cut(s)	334, 348
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	35, 71
Eco88I	CYCGRG	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	41
EcoT38I	GRGCYC	2 cut(s)	334, 348
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	49, 136, 471, 511
FaiI	YATR	6 cut(s)	37, 47, 95, 134, 469, 509
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	45, 132, 467, 507
FbaI	TGATCA	1 cut(s)	109
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	334, 348
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	4 cut(s)	82, 84, 180, 182
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	102, 184
HhaI	GCGC	4 cut(s)	83, 85, 181, 183
Hin1II	CATG	4 cut(s)	49, 136, 471, 511
Hin6I	GCGC	4 cut(s)	81, 83, 179, 181
HinP1I	GCGC	4 cut(s)	81, 83, 179, 181
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	3 cut(s)	173, 364, 392
HpaII	CCGG	2 cut(s)	102, 184
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	382, 499
Hpy188I	TCNGA	6 cut(s)	90, 109, 192, 222, 329, 369
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	2 cut(s)	382, 499
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	9, 503
HpyCH4V	TGCA	4 cut(s)	4, 39, 45, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	4 cut(s)	312, 326, 347, 438
HpySE526I	ACGT	2 cut(s)	9, 503
Hsp92II	CATG	4 cut(s)	49, 136, 471, 511
HspAI	GCGC	4 cut(s)	81, 83, 179, 181
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	109, 217
LmnI	GCTCC	3 cut(s)	80, 205, 343
LweI	GCATC	3 cut(s)	48, 183, 282
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	9, 503
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	111, 219
MboI	GATC	2 cut(s)	109, 217
MboII	GAAGA	5 cut(s)	113, 163, 431, 434, 437
MhlI	GDGCHC	5 cut(s)	210, 327, 334, 348, 439
MlyI	GAGTC	2 cut(s)	373, 386
MnlI	CCTC	4 cut(s)	34, 109, 135, 301
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	2 cut(s)	242, 462
MslI	CAYNNNNRTG	2 cut(s)	44, 506
MspI	CCGG	2 cut(s)	102, 184
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	83, 181
MwoI	GCNNNNNNNGC	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	2 cut(s)	109, 217
NlaIII	CATG	4 cut(s)	49, 136, 471, 511
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	41
PaeR7I	CTCGAG	1 cut(s)	394
PalAI	GGCGCGCC	1 cut(s)	179
PauI	GCGCGC	2 cut(s)	81, 179
PfeI	GAWTC	1 cut(s)	173
PleI	GAGTC	2 cut(s)	372, 386
PpsI	GAGTC	2 cut(s)	372, 386
Ppu21I	YACGTR	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	136, 226
PspXI	VCTCGAGB	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	367
PteI	GCGCGC	2 cut(s)	81, 179
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	44, 506
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	242, 462
Sau3AI	GATC	2 cut(s)	109, 217
Sau96I	GGNCC	2 cut(s)	136, 226
SchI	GAGTC	2 cut(s)	373, 386
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	5 cut(s)	210, 327, 334, 348, 439
SfaNI	GCATC	3 cut(s)	48, 183, 282
Sfr274I	CTCGAG	1 cut(s)	394
SgsI	GGCGCGCC	1 cut(s)	179
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	44, 506
SmlI	CTYRAG	3 cut(s)	305, 394, 430
SmoI	CTYRAG	3 cut(s)	305, 394, 430
SnaBI	TACGTA	1 cut(s)	10
SsiI	CCGC	2 cut(s)	148, 341
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	12, 506
TaqI	TCGA	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	242, 462
Tru9I	TTAA	2 cut(s)	242, 462
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	110, 113, 260, 432, 496
VpaK11BI	GGWCC	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	394
XspI	CTAG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.