Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

61396024 .. 61398104

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG420500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCATCTTCCAGTGGAAACTCGTCCGGCTCTCAGCTTCTTCAGAATTCCGGGTCCGAAGGGGACCTTCAGCATGTGATGGATCAGCGAAAGAGGAAGAGAATGCAGTCCAACCGGGAATCGGCGCGGCGGTCGCGGATGCGAAAACAGCAGCACTTGGATGAGTTGACGGCTCAGGTGACCCAACTGAGGAAGGAAAACGGTCAAATCCAGACCAGCATAAACATCACCACCCGGCACTACATGAACGTGGAGGCCGAGAATTCGGTTCTCAGGGCCCAGATGGCGGAGCTCAGCCAGAGACTGGAGTCTCTGACCGAGATCCTCAACTATATCAACGGCGGCAATAATAATGGGGTGTTTGAAACCGAACCGGGCCAGCTGCTTCAGACCGGCTCCACCGCTGCTGATCATAATAGCTTCATGAACCCTTGGAATAATTCGCTCTATTCAAACCAGCCCATCATGGCCGCTGCAGACATGCTTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

164

Amino Acids

18.46

Weight (kDa)

6.92

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	28 - 73	9.1e-08	Basic region leucine zipper
bZIP_1	PF00170	30 - 82	5.3e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccII	CGCG	2 cut(s)	127, 136
AciI	CCGC	7 cut(s)	127, 130, 136, 287, 342, 402, 471
AclWI	GGATC	2 cut(s)	90, 316
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	46, 262
AcuI	CTGAAG	4 cut(s)	26, 53, 371, 470
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
AgsI	TTSAA	2 cut(s)	365, 453
AluBI	AGCT	4 cut(s)	37, 292, 382, 420
AluI	AGCT	4 cut(s)	37, 292, 382, 420
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	295, 315
AlwI	GGATC	2 cut(s)	90, 316
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	4 cut(s)	255, 276, 376, 468
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	151, 382, 404, 473
ApoI	RAATTY	2 cut(s)	46, 262
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
AsuC2I	CCSGG	4 cut(s)	52, 116, 235, 375
AsuHPI	GGTGA	2 cut(s)	190, 220
AvaII	GGWCC	2 cut(s)	54, 64
BaeGI	GKGCMC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	280, 294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	163, 369, 391, 460
BccI	CCATC	3 cut(s)	73, 277, 470
BceAI	ACGGC	2 cut(s)	186, 355
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	4 cut(s)	52, 116, 235, 375
BcoDI	GTCTC	2 cut(s)	295, 315
BfmI	CTRYAG	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	7 cut(s)	128, 152, 343, 383, 405, 471, 474
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	7 cut(s)	129, 153, 344, 384, 406, 472, 475
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	4 cut(s)	52, 116, 235, 375
Bme18I	GGWCC	2 cut(s)	54, 64
BmgT120I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
BmiI	GGNNCC	4 cut(s)	55, 65, 278, 397
BmrFI	CCNGG	4 cut(s)	52, 116, 235, 375
BmsI	GCATC	2 cut(s)	14, 129
BoxI	GACNNNNGTC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuMI	CCSGG	4 cut(s)	52, 116, 235, 375
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	12, 309
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	144, 166
BseLI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
BseMII	CTCAG	5 cut(s)	47, 179, 188, 286, 307
BseNI	ACTGG	2 cut(s)	12, 309
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	4 cut(s)	163, 369, 391, 460
Bsh1236I	CGCG	2 cut(s)	127, 136
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	4 cut(s)	257, 278, 378, 470
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	6 cut(s)	27, 51, 115, 235, 374, 393
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	121, 189, 286, 304
BsmAI	GTCTC	2 cut(s)	295, 315
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	257, 278, 378, 470
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	280, 294
Bsp143I	GATC	3 cut(s)	82, 321, 409
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	127, 130, 136, 287, 342, 402, 471
BspANI	GGCC	4 cut(s)	257, 278, 378, 470
BspCNI	CTCAG	5 cut(s)	46, 180, 187, 285, 306
BspFNI	CGCG	2 cut(s)	127, 136
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	55, 65, 278, 397
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	90, 316
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	12, 309
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	82, 321, 409
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	5 cut(s)	33, 174, 188, 272, 293
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	144, 166
BstFNI	CGCG	2 cut(s)	127, 136
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	85, 324, 412
BstMAI	GTCTC	2 cut(s)	295, 315
BstMBI	GATC	3 cut(s)	82, 321, 409
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
BstNSI	RCATGY	2 cut(s)	77, 484
BstPAI	GACNNNNGTC	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	50, 114, 233, 373
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	2 cut(s)	127, 136
BstV1I	GCAGC	4 cut(s)	163, 369, 391, 460
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	257, 278, 378, 470
BtsCI	GGATG	2 cut(s)	144, 166
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	5 cut(s)	74, 244, 424, 466, 481
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	5 cut(s)	33, 174, 188, 272, 293
DpnI	GATC	3 cut(s)	84, 323, 411
DpnII	GATC	3 cut(s)	82, 321, 409
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	2 cut(s)	280, 294
Eco47I	GGWCC	2 cut(s)	54, 64
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	4 cut(s)	26, 53, 371, 470
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	2 cut(s)	64, 276
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	46, 262
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	2 cut(s)	280, 294
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	77, 247, 427, 469, 484
FaiI	YATR	8 cut(s)	75, 221, 245, 333, 414, 425, 467, 482
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	5 cut(s)	73, 243, 423, 465, 480
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	7 cut(s)	128, 152, 343, 383, 405, 471, 474
FokI	GGATG	2 cut(s)	151, 173
FriOI	GRGCYC	2 cut(s)	280, 294
Fsp4HI	GCNGC	7 cut(s)	128, 152, 343, 383, 405, 471, 474
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	7 cut(s)	128, 152, 343, 383, 405, 471, 474
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	257, 278, 378, 470
HapII	CCGG	6 cut(s)	27, 51, 115, 235, 374, 393
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	77, 247, 427, 469, 484
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	119, 308
HpaII	CCGG	6 cut(s)	27, 51, 115, 235, 374, 393
HphI	GGTGA	2 cut(s)	190, 220
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	4 cut(s)	45, 58, 315, 390
Hpy188III	TCNNGA	2 cut(s)	211, 424
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	3 cut(s)	53, 77, 187
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	106, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
HpyF3I	CTNAG	5 cut(s)	33, 174, 188, 272, 293
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	77, 247, 427, 469, 484
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	82, 321, 409
LmnI	GCTCC	2 cut(s)	289, 401
Lsp1109I	GCAGC	4 cut(s)	163, 369, 391, 460
LweI	GCATC	2 cut(s)	14, 129
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	84, 323, 411
MboI	GATC	3 cut(s)	82, 321, 409
MboII	GAAGA	2 cut(s)	32, 109
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	280, 294
MluCI	AATT	3 cut(s)	46, 262, 439
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	87, 183, 247, 335
MslI	CAYNNNNRTG	2 cut(s)	159, 248
MspA1I	CMGCKG	3 cut(s)	382, 404, 473
MspI	CCGG	6 cut(s)	27, 51, 115, 235, 374, 393
MspR9I	CCNGG	4 cut(s)	52, 116, 235, 375
Mva1269I	GAATGC	1 cut(s)	108
MvnI	CGCG	2 cut(s)	127, 136
MwoI	GCNNNNNNNGC	3 cut(s)	133, 148, 284
NciI	CCSGG	4 cut(s)	52, 116, 235, 375
NdeII	GATC	3 cut(s)	82, 321, 409
NlaIII	CATG	5 cut(s)	77, 247, 427, 469, 484
NlaIV	GGNNCC	4 cut(s)	55, 65, 278, 397
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	77, 484
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	7 cut(s)	129, 153, 344, 384, 406, 472, 475
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	178
PspN4I	GGNNCC	4 cut(s)	55, 65, 278, 397
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	5 cut(s)	54, 64, 276, 277, 376
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	159, 248
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	7 cut(s)	128, 152, 343, 383, 405, 471, 474
Sau3AI	GATC	3 cut(s)	82, 321, 409
Sau96I	GGNCC	5 cut(s)	54, 64, 276, 277, 376
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	52, 116, 235, 375
SduI	GDGCHC	2 cut(s)	280, 294
SetI	ASST	7 cut(s)	39, 69, 180, 252, 294, 384, 422
SfaNI	GCATC	2 cut(s)	14, 129
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	54, 64
SmiMI	CAYNNNNRTG	2 cut(s)	159, 248
Sse9I	AATT	3 cut(s)	46, 262, 439
SsiI	CCGC	7 cut(s)	127, 130, 136, 287, 342, 402, 471
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	4 cut(s)	50, 114, 233, 373
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	46, 262, 439
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	3 cut(s)	130, 345, 473
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	151, 382, 404, 473
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	260, 412, 440
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	54, 64
XapI	RAATTY	2 cut(s)	46, 262
XceI	RCATGY	2 cut(s)	77, 484
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.