Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

12589775 .. 12590995

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTACTTCTAGTGGGAACTCATCTGGCTCCAGCGCGCTTCAGATTATGAACTCCGGCTCCGATCAAGAGGGTCTTCATCAGGTCATGGACCAGAGGAAGCGGAAGAGAATGGTGTCTAATAGGGAATCGGCGCGCCGGTCTCGGATGCGAAAGCAGGAGCACCTGACTGATCTGACGGCCCAAGTTGGTCTGTTAATGAAAGAGAACAACCAAATCCTTACAAGCATCAATGTCACAAACCAGCTCTACCTGAACCTTGAGGCTGAGAACTGTGTGCTCAGAGCCCAGATGGCTGAGCTCAGCAACAGGTTGCAGAGTCTGAATGATATTCTGGACTATATTGACTCGAGTAAATGGCTTTTGGAGAATGAAGAAGAAGACTTGAGTGCTCAGTTTGGTGGTGACGGGTTTCTTAATCCATGGAGTAATCTCTGCTTCAATCAACCAGTTGACATGTTCATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

156

Amino Acids

17.69

Weight (kDa)

5.02

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	31 - 76	8.6e-08	Basic region leucine zipper
bZIP_1	PF00170	33 - 90	6.3e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	38, 136
AciI	CCGC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	247, 301
AluI	AGCT	2 cut(s)	247, 301
Alw21I	GWGCWC	4 cut(s)	165, 282, 303, 394
Alw26I	GTCTC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	349
AoxI	GGCC	1 cut(s)	180
AscI	GGCGCGCC	1 cut(s)	134
AspLEI	GCGC	4 cut(s)	38, 40, 136, 138
AspS9I	GGNCC	2 cut(s)	91, 181
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	2 cut(s)	289, 303
BbsI	GAAGAC	2 cut(s)	68, 387
Bbv12I	GWGCWC	4 cut(s)	165, 282, 303, 394
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	293
BlpI	GCTNAGC	2 cut(s)	297, 302
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	91, 181
BmiI	GGNNCC	2 cut(s)	31, 61
BmsI	GCATC	2 cut(s)	138, 237
BpiI	GAAGAC	2 cut(s)	68, 387
BpmI	CTGGAG	1 cut(s)	16
Bpu1102I	GCTNAGC	2 cut(s)	297, 302
BpuEI	CTTGAG	2 cut(s)	281, 406
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	5 cut(s)	258, 288, 295, 316, 407
BseNI	ACTGG	1 cut(s)	449
BsePI	GCGCGC	2 cut(s)	36, 134
Bsh1236I	CGCG	2 cut(s)	38, 136
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	4 cut(s)	165, 282, 303, 394
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	57, 139
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	5 cut(s)	165, 282, 289, 303, 394
Bsp143I	GATC	2 cut(s)	64, 172
Bsp1720I	GCTNAGC	2 cut(s)	297, 302
Bsp19I	CCATGG	1 cut(s)	422
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	5 cut(s)	259, 289, 294, 315, 406
BspFNI	CGCG	2 cut(s)	38, 136
BspLI	GGNNCC	2 cut(s)	31, 61
BspTNI	GGTCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	422
BssHII	GCGCGC	2 cut(s)	36, 134
BssMI	GATC	2 cut(s)	64, 172
BssT1I	CCWWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	38, 136
BstDEI	CTNAG	5 cut(s)	267, 281, 297, 302, 393
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	2 cut(s)	38, 136
BstHHI	GCGC	4 cut(s)	38, 40, 136, 138
BstKTI	GATC	2 cut(s)	67, 175
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	64, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	460
BstUI	CGCG	2 cut(s)	38, 136
BstV2I	GAAGAC	2 cut(s)	68, 387
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	38, 136
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	4 cut(s)	38, 40, 136, 138
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	91, 181
CviAII	CATG	4 cut(s)	88, 423, 457, 463
DdeI	CTNAG	5 cut(s)	267, 281, 297, 302, 393
DpnI	GATC	2 cut(s)	66, 174
DpnII	GATC	2 cut(s)	64, 172
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	2 cut(s)	289, 303
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	289, 303
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	4 cut(s)	91, 426, 460, 466
FaiI	YATR	6 cut(s)	50, 89, 342, 424, 458, 464
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	4 cut(s)	87, 422, 456, 462
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	2 cut(s)	289, 303
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	4 cut(s)	37, 39, 135, 137
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	57, 139
HhaI	GCGC	4 cut(s)	38, 40, 136, 138
Hin1II	CATG	4 cut(s)	91, 426, 460, 466
Hin6I	GCGC	4 cut(s)	36, 38, 134, 136
HinP1I	GCGC	4 cut(s)	36, 38, 134, 136
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	3 cut(s)	128, 319, 347
HpaII	CCGG	2 cut(s)	57, 139
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	6 cut(s)	45, 64, 147, 177, 284, 324
Hpy188III	TCNNGA	2 cut(s)	68, 335
Hpy8I	GTNNAC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	5 cut(s)	267, 281, 297, 302, 393
Hsp92II	CATG	4 cut(s)	91, 426, 460, 466
HspAI	GCGC	4 cut(s)	36, 38, 134, 136
Kzo9I	GATC	2 cut(s)	64, 172
LmnI	GCTCC	3 cut(s)	35, 65, 160
LweI	GCATC	2 cut(s)	138, 237
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	235, 404
MalI	GATC	2 cut(s)	66, 174
MboI	GATC	2 cut(s)	64, 172
MboII	GAAGA	5 cut(s)	68, 118, 386, 389, 392
MhlI	GDGCHC	5 cut(s)	165, 282, 289, 303, 394
MlyI	GAGTC	2 cut(s)	328, 341
MnlI	CCTC	3 cut(s)	64, 90, 256
MseI	TTAA	2 cut(s)	197, 417
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	2 cut(s)	57, 139
MvnI	CGCG	2 cut(s)	38, 136
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	64, 172
NlaIII	CATG	4 cut(s)	91, 426, 460, 466
NlaIV	GGNNCC	2 cut(s)	31, 61
NmuCI	GTSAC	2 cut(s)	235, 404
NspI	RCATGY	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	349
PalAI	GGCGCGCC	1 cut(s)	134
PauI	GCGCGC	2 cut(s)	36, 134
PciI	ACATGT	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	128
PleI	GAGTC	2 cut(s)	327, 341
PpsI	GAGTC	2 cut(s)	327, 341
PscI	ACATGT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	31, 61
PspPI	GGNCC	2 cut(s)	91, 181
PspXI	VCTCGAGB	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	322
PteI	GCGCGC	2 cut(s)	36, 134
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	197, 417
Sau3AI	GATC	2 cut(s)	64, 172
Sau96I	GGNCC	2 cut(s)	91, 181
SchI	GAGTC	2 cut(s)	328, 341
SduI	GDGCHC	5 cut(s)	165, 282, 289, 303, 394
SetI	ASST	7 cut(s)	87, 168, 249, 255, 261, 303, 314
SfaNI	GCATC	2 cut(s)	138, 237
Sfr274I	CTCGAG	1 cut(s)	349
SgsI	GGCGCGCC	1 cut(s)	134
SinI	GGWCC	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	3 cut(s)	260, 349, 385
SmoI	CTYRAG	3 cut(s)	260, 349, 385
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	197, 417
Tru9I	TTAA	2 cut(s)	197, 417
TseFI	GTSAC	2 cut(s)	235, 404
Tsp45I	GTSAC	2 cut(s)	235, 404
TspDTI	ATGAA	5 cut(s)	65, 68, 215, 387, 451
VpaK11BI	GGWCC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	349
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.