pycom02g11070
BZIP Family

Ocs element-binding factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001596
Physical Location & Seq
Reverse (-)
7830227 .. 7830604
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11070.1

Sequence Viewer

Length: 378 bp
ATGGCTTCTTCAAGTGGGGTTTCTTCAGAGTCAAGCAAGCTCCAAAACTCAGGATCTGATGAAGACCTTAACCAAGTCATGGACCAGAGAAAGCGCAAAAGAATGCTGTCCAACCGGGAATCGGCACGTCGATCCCGGATGCGAAAACAGGAGCATATGACTGATCTGGCGGCTCAGATTGGTCTCCTTACAAGGGATAACAACCAGATCATCACATCCATGAACGTGACCAACCAGCGTTACATGAAGCTCGAGGCAGAAAACTCAGTCCTCAGAGCTCAGATGGATGAGCTCACAAACAGATTGCAGTCTCTCAATGATATTATGGATTGTATTAATTCAAGCAAATGGATCTATCTCGGTCGAGGAAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

126

Amino Acids

14.43

Weight (kDa)

9.99

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 28 - 70 5.7e-08 Basic region leucine zipper
bZIP_1 PF00170 30 - 74 2.1e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 1 cut(s) 170
AclWI GGATC 3 cut(s) 61, 126, 359
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 79, 121, 193
AgsI TTSAA 2 cut(s) 12, 342
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 4 cut(s) 40, 250, 278, 292
AluI AGCT 4 cut(s) 40, 250, 278, 292
Alw21I GWGCWC 2 cut(s) 280, 294
Alw26I GTCTC 2 cut(s) 188, 315
AlwI GGATC 3 cut(s) 61, 126, 359
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 251
AseI ATTAAT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 2 cut(s) 116, 136
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 280, 294
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 280, 294
BccI CCATC 1 cut(s) 277
BcnI CCSGG 2 cut(s) 116, 136
BcoDI GTCTC 2 cut(s) 188, 315
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 116, 136
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 116, 136
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 116, 136
BsaI GGTCTC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 121, 193
BseGI GGATG 3 cut(s) 144, 215, 292
BseLI CCNNNNNNNGG 3 cut(s) 79, 121, 193
BseMII CTCAG 5 cut(s) 63, 188, 279, 286, 293
Bsh1285I CGRYCG 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 280, 294
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 115, 136
BslI CCNNNNNNNGG 3 cut(s) 79, 121, 193
BsmAI GTCTC 2 cut(s) 188, 315
BsmI GAATGC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 280, 294
Bsp143I GATC 5 cut(s) 53, 131, 163, 207, 351
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 5 cut(s) 62, 187, 278, 285, 292
BspPI GGATC 3 cut(s) 61, 126, 359
BspTNI GGTCTC 1 cut(s) 188
BssMI GATC 5 cut(s) 53, 131, 163, 207, 351
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 5 cut(s) 49, 174, 265, 272, 279
BstF5I GGATG 3 cut(s) 144, 215, 292
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 56, 134, 166, 210, 354
BstMAI GTCTC 2 cut(s) 188, 315
BstMBI GATC 5 cut(s) 53, 131, 163, 207, 351
BstMCI CGRYCG 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 114, 134
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 53, 351
BstYI RGATCY 2 cut(s) 53, 351
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 144, 215, 292
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 82
CviAII CATG 3 cut(s) 79, 220, 244
CviJI RGCY 6 cut(s) 5, 40, 173, 250, 278, 292
CviKI_1 RGCY 6 cut(s) 5, 40, 173, 250, 278, 292
DdeI CTNAG 5 cut(s) 49, 174, 265, 272, 279
DpnI GATC 5 cut(s) 55, 133, 165, 209, 353
DpnII GATC 5 cut(s) 53, 131, 163, 207, 351
Ecl136II GAGCTC 2 cut(s) 278, 292
Eco24I GRGCYC 2 cut(s) 280, 294
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 2 cut(s) 278, 292
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 2 cut(s) 278, 292
EcoT38I GRGCYC 2 cut(s) 280, 294
FaeI CATG 3 cut(s) 82, 223, 247
FaiI YATR 6 cut(s) 80, 156, 158, 221, 245, 326
FatI CATG 3 cut(s) 78, 219, 243
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 3 cut(s) 151, 202, 299
FriOI GRGCYC 2 cut(s) 280, 294
Fsp4HI GCNGC 1 cut(s) 171
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 171
HapII CCGG 2 cut(s) 115, 136
HhaI GCGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 82, 223, 247
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 29, 119
HpaII CCGG 2 cut(s) 115, 136
Hpy188I TCNGA 5 cut(s) 28, 58, 177, 275, 282
Hpy188III TCNNGA 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 132
HpyCH4IV ACGT 2 cut(s) 127, 225
HpyCH4V TGCA 1 cut(s) 307
HpyF3I CTNAG 5 cut(s) 49, 174, 265, 272, 279
HpySE526I ACGT 2 cut(s) 127, 225
Hsp92II CATG 3 cut(s) 82, 223, 247
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 5 cut(s) 53, 131, 163, 207, 351
LmnI GCTCC 2 cut(s) 45, 151
LpnPI CCDG 8 cut(s) 36, 98, 128, 134, 149, 152, 218, 248
LweI GCATC 1 cut(s) 129
MaeII ACGT 2 cut(s) 127, 225
MaeIII GTNAC 2 cut(s) 226, 239
MalI GATC 5 cut(s) 55, 133, 165, 209, 353
MboI GATC 5 cut(s) 53, 131, 163, 207, 351
MboII GAAGA 2 cut(s) 15, 74
MflI RGATCY 2 cut(s) 53, 351
MhlI GDGCHC 2 cut(s) 280, 294
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 247, 281, 359
MseI TTAA 2 cut(s) 69, 336
MslI CAYNNNNRTG 2 cut(s) 218, 224
MspI CCGG 2 cut(s) 115, 136
MspR9I CCNGG 2 cut(s) 116, 136
Mva1269I GAATGC 1 cut(s) 108
NciI CCSGG 2 cut(s) 116, 136
NdeI CATATG 1 cut(s) 156
NdeII GATC 5 cut(s) 53, 131, 163, 207, 351
NlaIII CATG 3 cut(s) 82, 223, 247
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 251
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 134
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 336
Psp124BI GAGCTC 2 cut(s) 280, 294
PspPI GGNCC 1 cut(s) 82
PspXI VCTCGAGB 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 2 cut(s) 53, 351
RseI CAYNNNNRTG 2 cut(s) 218, 224
SacI GAGCTC 2 cut(s) 280, 294
SaqAI TTAA 2 cut(s) 69, 336
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 5 cut(s) 53, 131, 163, 207, 351
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 116, 136
SduI GDGCHC 2 cut(s) 280, 294
SetI ASST 7 cut(s) 42, 69, 130, 228, 252, 280, 294
SfaNI GCATC 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 218, 224
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 337
SsiI CCGC 1 cut(s) 170
SstI GAGCTC 2 cut(s) 280, 294
StyD4I CCNGG 2 cut(s) 114, 134
TaiI ACGT 2 cut(s) 130, 228
TaqI TCGA 3 cut(s) 130, 252, 364
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 69, 336
Tru9I TTAA 2 cut(s) 69, 336
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 75, 236, 260
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.