FvH4_2g39350
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001596
Physical Location & Seq
Reverse (-)
28276595 .. 28277110
516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39350.t1

Sequence Viewer

Length: 516 bp
ATGGCTACTTCGAGCGGAAACTCTTCTGGTTCACAGCTTCATAACTCGGGATCGGAAGGGGACCTTCAGCATGCGATTGATCAGCGAAAGCGGAAGAGAATGCAGTCCAACAGGGAATCTGCGCGGCGGTCGAGGATGCGGAAGCAGCAGCACTTGGATGAGCTGACGGCTCAGGTGGCCCAGCTGAGGAAGGAAAACGGTCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAACGTGGAGGCCGAGAATTCGGTTCTCAAGGCCCAGATGGCGGAGCTCAGCCAGAGACTGGACTCCTTGACCGAGATCCTCAACTATATCAACGGCAACAACAATATTAACTCGAATAATAATGGGGTGTTCGAAACCGAACCGGCCGGCCAGCTGCTTCAGACCGGCTCCACCGCTGCCGATCATAACAGCAGCTTCATGATGAACCCTTGGAATAATTTGCTCTACTCAAACCTGCCCATCATGGCCACAGCAGACATGCTGCAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

172

Amino Acids

19.14

Weight (kDa)

6.51

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 27 - 72 1.8e-07 Basic region leucine zipper
bZIP_1 PF00170 29 - 83 2.1e-11 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 1 cut(s) 124
AciI CCGC 7 cut(s) 15, 91, 124, 127, 139, 284, 417
AclWI GGATC 2 cut(s) 58, 313
AcoI YGGCCR 3 cut(s) 387, 391, 489
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 50, 386
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 186, 283, 301
AluBI AGCT 6 cut(s) 37, 163, 184, 289, 397, 438
AluI AGCT 6 cut(s) 37, 163, 184, 289, 397, 438
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 58, 313
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 6 cut(s) 177, 252, 273, 387, 391, 489
ApeKI GCWGC 6 cut(s) 145, 148, 397, 419, 435, 505
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 22
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 61, 178, 274
AsuHPI GGTGA 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 375
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 6 cut(s) 157, 160, 384, 406, 447, 492
BccI CCATC 2 cut(s) 274, 491
BceAI ACGGC 2 cut(s) 183, 352
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 7 cut(s) 125, 146, 149, 398, 420, 436, 506
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 7 cut(s) 126, 147, 150, 399, 421, 437, 507
BmcAI AGTACT 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 3 cut(s) 61, 178, 274
BmiI GGNNCC 2 cut(s) 62, 412
BmsI GCATC 1 cut(s) 126
Bpu10I CCTNAGC 2 cut(s) 171, 185
Bpu1102I GCTNAGC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 283, 301
Bse118I RCCGGY 3 cut(s) 385, 389, 407
Bse1I ACTGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 2 cut(s) 141, 163
BseLI CCNNNNNNNGG 3 cut(s) 186, 283, 301
BseMII CTCAG 3 cut(s) 176, 185, 304
BseNI ACTGG 1 cut(s) 306
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 6 cut(s) 157, 160, 384, 406, 447, 492
BseYI CCCAGC 2 cut(s) 180, 231
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 2 cut(s) 131, 390
BshFI GGCC 6 cut(s) 179, 254, 275, 389, 393, 491
BsiEI CGRYCG 2 cut(s) 131, 390
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 3 cut(s) 386, 390, 408
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 186, 283, 301
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 6 cut(s) 179, 254, 275, 389, 393, 491
BsoBI CYCGRG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 4 cut(s) 50, 79, 318, 424
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 7 cut(s) 15, 91, 124, 127, 139, 284, 417
BspANI GGCC 6 cut(s) 179, 254, 275, 389, 393, 491
BspCNI CTCAG 3 cut(s) 177, 184, 303
BspFNI CGCG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 62, 412
BspMAI CTGCAG 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 486
BspPI GGATC 2 cut(s) 58, 313
BspT104I TTCGAA 1 cut(s) 375
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 3 cut(s) 385, 389, 407
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 3 cut(s) 385, 389, 407
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 4 cut(s) 50, 79, 318, 424
BssT1I CCWWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 2 cut(s) 28, 89
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 3 cut(s) 72, 391, 395
BstDEI CTNAG 3 cut(s) 171, 185, 290
BstF5I GGATG 2 cut(s) 141, 163
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 4 cut(s) 53, 82, 321, 427
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 4 cut(s) 50, 79, 318, 424
BstMCI CGRYCG 2 cut(s) 131, 390
BstMWI GCNNNNNNNGC 3 cut(s) 145, 176, 281
BstNSI RCATGY 2 cut(s) 74, 505
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 6 cut(s) 157, 160, 384, 406, 447, 492
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 387
BsuRI GGCC 6 cut(s) 179, 254, 275, 389, 393, 491
BtsCI GGATG 2 cut(s) 141, 163
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 72, 391, 395
CaiI CAGNNNCTG 1 cut(s) 301
CciI TCATGA 1 cut(s) 441
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 3 cut(s) 385, 389, 407
Cfr13I GGNCC 3 cut(s) 61, 178, 274
Csp6I GTAC 1 cut(s) 511
CviAII CATG 5 cut(s) 71, 241, 442, 487, 502
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 3 cut(s) 171, 185, 290
DpnI GATC 4 cut(s) 52, 81, 320, 426
DpnII GATC 4 cut(s) 50, 79, 318, 424
EaeI YGGCCR 3 cut(s) 387, 391, 489
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 28, 89
EarI CTCTTC 2 cut(s) 28, 89
EciI GGCGGA 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 50, 386
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 5 cut(s) 74, 244, 445, 490, 505
FaiI YATR 9 cut(s) 42, 72, 218, 242, 330, 429, 443, 488, 503
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 74
FatI CATG 5 cut(s) 70, 240, 441, 486, 501
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 7 cut(s) 125, 146, 149, 398, 420, 436, 506
FokI GGATG 2 cut(s) 148, 170
FriOI GRGCYC 1 cut(s) 291
FseI GGCCGGCC 1 cut(s) 393
Fsp4HI GCNGC 7 cut(s) 125, 146, 149, 398, 420, 436, 506
GlaI GCGC 1 cut(s) 123
GluI GCNGC 7 cut(s) 125, 146, 149, 398, 420, 436, 506
GsaI CCCAGC 2 cut(s) 184, 235
HaeIII GGCC 6 cut(s) 179, 254, 275, 389, 393, 491
HapII CCGG 3 cut(s) 386, 390, 408
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 74, 244, 445, 490, 505
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 2 cut(s) 116, 305
HpaII CCGG 3 cut(s) 386, 390, 408
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 55, 405
Hpy188III TCNNGA 3 cut(s) 48, 208, 442
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 50, 74, 184
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 103, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 176, 281
HpyF3I CTNAG 3 cut(s) 171, 185, 290
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 5 cut(s) 74, 244, 445, 490, 505
HspAI GCGC 1 cut(s) 122
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 50, 79, 318, 424
LmnI GCTCC 2 cut(s) 286, 416
Lsp1109I GCAGC 6 cut(s) 157, 160, 384, 406, 447, 492
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 246
MalI GATC 4 cut(s) 52, 81, 320, 426
MbiI CCGCTC 1 cut(s) 15
MboI GATC 4 cut(s) 50, 79, 318, 424
MboII GAAGA 2 cut(s) 15, 106
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 259, 460
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 126, 180, 244, 332
Mox20I TGGCCA 1 cut(s) 491
MroNI GCCGGC 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 491
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 156, 245
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 3 cut(s) 184, 397, 419
MspI CCGG 3 cut(s) 386, 390, 408
Mva1269I GAATGC 1 cut(s) 105
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 145, 176, 281
NaeI GCCGGC 1 cut(s) 391
NdeII GATC 4 cut(s) 50, 79, 318, 424
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 5 cut(s) 74, 244, 445, 490, 505
NlaIV GGNNCC 2 cut(s) 62, 412
NmeAIII GCCGAG 1 cut(s) 280
NspI RCATGY 2 cut(s) 74, 505
NspV TTCGAA 1 cut(s) 375
PaeI GCATGC 1 cut(s) 74
PagI TCATGA 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 7 cut(s) 126, 147, 150, 399, 421, 437, 507
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 61
PspFI CCCAGC 2 cut(s) 180, 231
PspN4I GGNNCC 2 cut(s) 62, 412
PspPI GGNCC 3 cut(s) 61, 178, 274
PspPPI RGGWCCY 1 cut(s) 61
PstI CTGCAG 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 318
PvuII CAGCTG 2 cut(s) 184, 397
RigI GGCCGGCC 1 cut(s) 393
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 156, 245
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 7 cut(s) 125, 146, 149, 398, 420, 436, 506
Sau3AI GATC 4 cut(s) 50, 79, 318, 424
Sau96I GGNCC 3 cut(s) 61, 178, 274
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 2 cut(s) 156, 245
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 74
Sse9I AATT 2 cut(s) 259, 460
SsiI CCGC 7 cut(s) 15, 91, 124, 127, 139, 284, 417
SspI AATATT 1 cut(s) 349
SstI GAGCTC 1 cut(s) 291
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 249
TaqI TCGA 4 cut(s) 11, 131, 356, 375
TaqII GACCGA 1 cut(s) 329
TasI AATT 2 cut(s) 259, 460
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 6 cut(s) 145, 148, 397, 419, 435, 505
TspDTI ATGAA 4 cut(s) 29, 257, 430, 461
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 259
XceI RCATGY 2 cut(s) 74, 505
XmnI GAANNNNTTC 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.