Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

7838993 .. 7839916

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCAGCGAAAGAGGAAGAGAATGCAGTCCAACCGGGAATCGGCGAGGCGGTCGCGGATGCGAAAACAGCAGCACTTGGATGAGCTGACGGCTCAGGTGACCCAGCTGAGGAAGGAAAATGGTCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAACGTGGAGGCCGAGAATTCGGTTCTCAGGGCCCAGATGGGGGAGCTCAGCCAGAGACTGGAGTCTCTGACCGAGATCCTCAACTATATCAACGGCGACAATAATAAAGGGGTGTTTGAAACCGAAACGGGACAGCTGCTTCAGACCGGCTCCACCGCTGCTGATCATAATAGCTTCATGAACCCTTGGAATAATTCGCTCTATTCAAACCAGCCCATCATGGCCGCTGCAGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

136

Amino Acids

15.52

Weight (kDa)

8.1

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	2 - 47	6e-08	Basic region leucine zipper
bZIP_1	PF00170	4 - 58	2.3e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	58
AciI	CCGC	4 cut(s)	52, 58, 324, 393
AclWI	GGATC	2 cut(s)	12, 238
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	5 cut(s)	43, 111, 207, 208, 226
AgsI	TTSAA	2 cut(s)	287, 375
AluBI	AGCT	5 cut(s)	88, 109, 214, 304, 342
AluI	AGCT	5 cut(s)	88, 109, 214, 304, 342
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	217, 237
AlwI	GGATC	2 cut(s)	12, 238
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	3 cut(s)	177, 198, 390
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	73, 304, 326, 395
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	198, 199
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	112, 142
BaeGI	GKGCMC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	202, 216
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	85, 291, 313, 382
BccI	CCATC	2 cut(s)	199, 392
BceAI	ACGGC	2 cut(s)	108, 277
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	217, 237
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	5 cut(s)	74, 305, 327, 393, 396
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	5 cut(s)	75, 306, 328, 394, 397
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	198, 199
BmiI	GGNNCC	2 cut(s)	200, 319
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	96, 110
Bpu1102I	GCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 111, 207, 208, 226
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	66, 88
BseLI	CCNNNNNNNGG	5 cut(s)	43, 111, 207, 208, 226
BseMII	CTCAG	4 cut(s)	101, 110, 208, 229
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	85, 291, 313, 382
BseYI	CCCAGC	2 cut(s)	105, 156
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	179, 200, 392
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	37, 315
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	43, 111, 207, 208, 226
BsmAI	GTCTC	2 cut(s)	217, 237
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	179, 200, 392
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	202, 216
Bsp143I	GATC	3 cut(s)	4, 243, 331
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	4 cut(s)	52, 58, 324, 393
BspANI	GGCC	3 cut(s)	179, 200, 392
BspCNI	CTCAG	4 cut(s)	102, 109, 207, 228
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	200, 319
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	12, 238
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	3 cut(s)	4, 243, 331
BssT1I	CCWWGG	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	96, 110, 194, 215
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	66, 88
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	3 cut(s)	7, 246, 334
BstMAI	GTCTC	2 cut(s)	217, 237
BstMBI	GATC	3 cut(s)	4, 243, 331
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstPAI	GACNNNNGTC	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	85, 291, 313, 382
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	179, 200, 392
BtsCI	GGATG	2 cut(s)	66, 88
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	198, 199
CviAII	CATG	3 cut(s)	166, 346, 388
DdeI	CTNAG	4 cut(s)	96, 110, 194, 215
DpnI	GATC	3 cut(s)	6, 245, 333
DpnII	GATC	3 cut(s)	4, 243, 331
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	202, 216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	202, 216
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	169, 349, 391
FaiI	YATR	7 cut(s)	143, 167, 255, 336, 347, 389, 404
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	165, 345, 387
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	74, 305, 327, 393, 396
FokI	GGATG	2 cut(s)	73, 95
FriOI	GRGCYC	2 cut(s)	202, 216
Fsp4HI	GCNGC	5 cut(s)	74, 305, 327, 393, 396
GluI	GCNGC	5 cut(s)	74, 305, 327, 393, 396
GsaI	CCCAGC	2 cut(s)	109, 160
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	179, 200, 392
HapII	CCGG	2 cut(s)	37, 315
Hin1II	CATG	3 cut(s)	169, 349, 391
HinfI	GANTC	2 cut(s)	41, 230
HpaII	CCGG	2 cut(s)	37, 315
HphI	GGTGA	2 cut(s)	112, 142
Hpy188I	TCNGA	2 cut(s)	237, 312
Hpy188III	TCNNGA	2 cut(s)	133, 346
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	28, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	4 cut(s)	96, 110, 194, 215
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	169, 349, 391
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	4, 243, 331
LmnI	GCTCC	2 cut(s)	211, 323
Lsp1109I	GCAGC	4 cut(s)	85, 291, 313, 382
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	6, 245, 333
MboI	GATC	3 cut(s)	4, 243, 331
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	202, 216
MluCI	AATT	2 cut(s)	184, 361
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	9, 42, 105, 169, 257
MslI	CAYNNNNRTG	2 cut(s)	81, 170
MspA1I	CMGCKG	4 cut(s)	109, 304, 326, 395
MspI	CCGG	2 cut(s)	37, 315
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	4, 243, 331
NlaIII	CATG	3 cut(s)	169, 349, 391
NlaIV	GGNNCC	2 cut(s)	200, 319
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	75, 306, 328, 394, 397
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	2 cut(s)	105, 156
PspN4I	GGNNCC	2 cut(s)	200, 319
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	198, 199
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	2 cut(s)	109, 304
RseI	CAYNNNNRTG	2 cut(s)	81, 170
SacI	GAGCTC	1 cut(s)	216
SatI	GCNGC	5 cut(s)	74, 305, 327, 393, 396
Sau3AI	GATC	3 cut(s)	4, 243, 331
Sau96I	GGNCC	2 cut(s)	198, 199
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	202, 216
SetI	ASST	7 cut(s)	90, 102, 111, 174, 216, 306, 344
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	2 cut(s)	81, 170
Sse9I	AATT	2 cut(s)	184, 361
SsiI	CCGC	4 cut(s)	52, 58, 324, 393
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	353
TaiI	ACGT	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	184, 361
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	73, 304, 326, 395
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	182, 334, 362
Van91I	CCANNNNNTGG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.