Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

12462909 .. 12463760

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTCTTCTAGTGGGACATCCTCAGGTTCTTCCATGCTTCAAAACTCTGGTTCTGAAGAAGACTTGCAGGTTCTGATGGACCAGAGAAAAAGAAAGAGAATGATTTCTAATCGTGAATCTGCAAGGAGGTCTAGGATGAGAAAGCAGAAGCACTTGGATGATTTGATGGCTCAGATGGCTGAGCTGAAGAAGGAGAACAATCAGATCATCACCAGCGTGAACATCACAAGCCAGCATTACATGAACATTGAGGCAGAGAACTCTGTTCTCAGAGCCCAAGCGGATGAGCTTAGCAACAGACTGCAGTCTCTGAATGAGATTGCGAGTTTCTTGAATGCAAGCAATGGGGTTTTTGCTGCTGGGGATTCGAGCAGCTTCAATGAGCCCACTGACAGCTTCTTCAACCCATTGAATCTGTCATATTTAAACCAGCCCATCATGGCTTCTGCTGCAGAGATGTTTCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

158

Amino Acids

17.59

Weight (kDa)

5.91

Isoelectric Point (pI)

69.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	78, 209
AgsI	TTSAA	5 cut(s)	44, 337, 382, 406, 415
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	4 cut(s)	187, 292, 378, 399
AluI	AGCT	4 cut(s)	187, 292, 378, 399
Alw26I	GTCTC	1 cut(s)	315
AlwNI	CAGNNNCTG	2 cut(s)	76, 313
ApeKI	GCWGC	3 cut(s)	359, 375, 452
Asp700I	GAANNNNTTC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	82
AxyI	CCTNAGG	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	280, 390
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	346, 387, 439
BccI	CCATC	4 cut(s)	73, 163, 172, 446
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	12, 135
BfmI	CTRYAG	2 cut(s)	305, 453
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	360, 376, 453
BlpI	GCTNAGC	2 cut(s)	183, 293
BlsI	GCNGC	3 cut(s)	361, 377, 454
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	69
Bpu1102I	GCTNAGC	2 cut(s)	183, 293
Bse21I	CCTNAGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	352
BseGI	GGATG	4 cut(s)	20, 144, 166, 292
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	4 cut(s)	39, 174, 188, 286
BseXI	GCAGC	3 cut(s)	346, 387, 439
BseYI	CCCAGC	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	280, 390
Bsp143I	GATC	1 cut(s)	207
Bsp1720I	GCTNAGC	2 cut(s)	183, 293
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	4 cut(s)	38, 175, 187, 285
BspMAI	CTGCAG	2 cut(s)	309, 457
BspMI	ACCTGC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	352
BssMI	GATC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	236, 343
BstDEI	CTNAG	5 cut(s)	25, 174, 183, 272, 293
BstF5I	GGATG	4 cut(s)	20, 144, 166, 292
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 452
BstPAI	GACNNNNGTC	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	305, 453
BstV1I	GCAGC	3 cut(s)	346, 387, 439
BstV2I	GAAGAC	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	20, 144, 166, 292
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	236, 343
CaiI	CAGNNNCTG	2 cut(s)	76, 313
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	3 cut(s)	37, 244, 442
DdeI	CTNAG	5 cut(s)	25, 174, 183, 272, 293
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
DraI	TTTAAA	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	280, 390
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	78, 209
Eco81I	CCTNAGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	280, 390
FaeI	CATG	3 cut(s)	40, 247, 445
FaiI	YATR	4 cut(s)	38, 245, 424, 443
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	36, 243, 441
Fnu4HI	GCNGC	3 cut(s)	360, 376, 453
FokI	GGATG	4 cut(s)	7, 151, 173, 299
FriOI	GRGCYC	2 cut(s)	280, 390
Fsp4HI	GCNGC	3 cut(s)	360, 376, 453
FspBI	CTAG	2 cut(s)	12, 135
GluI	GCNGC	3 cut(s)	360, 376, 453
GsaI	CCCAGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	40, 247, 445
HinfI	GANTC	3 cut(s)	119, 368, 415
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	6 cut(s)	58, 78, 177, 207, 275, 315
Hpy188III	TCNNGA	2 cut(s)	116, 334
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	70, 125, 307, 341, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 452
HpyF3I	CTNAG	5 cut(s)	25, 174, 183, 272, 293
Hsp92II	CATG	3 cut(s)	40, 247, 445
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	12, 36, 56, 98, 229, 248, 348, 446
Lsp1109I	GCAGC	3 cut(s)	346, 387, 439
MaeI	CTAG	2 cut(s)	12, 135
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	5 cut(s)	24, 71, 74, 202, 394
MhlI	GDGCHC	2 cut(s)	280, 390
MnlI	CCTC	3 cut(s)	34, 123, 247
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	2 cut(s)	159, 218
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	179, 452
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	3 cut(s)	40, 247, 445
OliI	CACNNNNGTG	1 cut(s)	218
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	119, 368, 415
PkrI	GCNGC	3 cut(s)	361, 377, 454
PshAI	GACNNNNGTC	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	82
PstI	CTGCAG	2 cut(s)	309, 457
PstNI	CAGNNNCTG	2 cut(s)	76, 313
RseI	CAYNNNNRTG	2 cut(s)	159, 218
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	3 cut(s)	360, 376, 453
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	280, 390
SetI	ASST	7 cut(s)	31, 75, 134, 189, 294, 380, 401
SfcI	CTRYAG	2 cut(s)	305, 453
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	159, 218
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	12, 135
TaqI	TCGA	1 cut(s)	371
TfiI	GAWTC	3 cut(s)	119, 368, 415
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	3 cut(s)	359, 375, 452
TspDTI	ATGAA	2 cut(s)	260, 455
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	2 cut(s)	12, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.