Rorug02G0089600
BZIP Family

Ocs element-binding factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001596
Physical Location & Seq
Reverse (-)
7156962 .. 7157348
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0089600.1

Sequence Viewer

Length: 387 bp
ATGGCGGTTTTCTTTATCTTTATGTTTTCTCTCATTCTCTCCTCCTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACAGAGCTCCTTCTGGACCTGCAGGCTACTCCTGCAGAAGGCCTGAAACTGTTACGGTGAATGATTTTGTATACTCCGGCCTAGGCGTTGCCGGTAACACCTCAAACATTTTCAGAGCTGCAAACACCCCTGCGTCCGCAGCTGAGTTTCCTGGTGTGAATGGCCTTGGCATTTCAATGTCTCGTGTAGACTTGGCTGCCGGTGGTGTTGTCCCTTTGCATATACACCCCGGAGCGAATGAAGTCTTACTTGTTGCGCAAGGAACACTAGTTTCATATCCTCGGATCGCAACACAGTTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

128

Amino Acids

13.41

Weight (kDa)

6.01

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 117 1.2e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 2 cut(s) 153, 270
AciI CCGC 2 cut(s) 5, 219
AclWI GGATC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 1 cut(s) 258
AhlI ACTAGT 1 cut(s) 349
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 89, 200, 224
AluI AGCT 3 cut(s) 89, 200, 224
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 374
AoxI GGCC 3 cut(s) 122, 160, 244
ApeKI GCWGC 4 cut(s) 53, 200, 221, 278
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 163
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 4 cut(s) 40, 187, 233, 265
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 267
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 2 cut(s) 164, 350
BfmI CTRYAG 3 cut(s) 82, 102, 115
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 54, 201, 222, 279
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 4 cut(s) 55, 202, 223, 280
Bme1390I CCNGG 2 cut(s) 234, 312
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 234, 312
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse118I RCCGGY 2 cut(s) 173, 281
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 163, 247, 310, 362
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 4 cut(s) 40, 187, 233, 265
BshFI GGCC 3 cut(s) 124, 162, 246
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 4 cut(s) 159, 174, 282, 312
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 124, 162, 246
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 2 cut(s) 5, 219
BspANI GGCC 3 cut(s) 124, 162, 246
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 2 cut(s) 106, 119
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 374
BsrFI RCCGGY 2 cut(s) 173, 281
BssAI RCCGGY 2 cut(s) 173, 281
BssECI CCNNGG 4 cut(s) 163, 247, 310, 362
BssMI GATC 1 cut(s) 366
BssNAI GTATAC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 163, 247
Bst1107I GTATAC 1 cut(s) 154
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 133, 139, 378
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 2 cut(s) 114, 221
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 232, 310
BstSFI CTRYAG 3 cut(s) 82, 102, 115
BstV1I GCAGC 4 cut(s) 40, 187, 233, 265
BstZ17I GTATAC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 124, 162, 246
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 2 cut(s) 173, 281
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 204
CviJI RGCY 8 cut(s) 89, 108, 124, 162, 200, 224, 246, 278
CviKI_1 RGCY 8 cut(s) 89, 108, 124, 162, 200, 224, 246, 278
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 163, 247
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 163, 247
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 2 cut(s) 163, 247
FaiI YATR 6 cut(s) 23, 51, 154, 303, 305, 358
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 278
FblI GTMKAC 2 cut(s) 153, 270
Fnu4HI GCNGC 4 cut(s) 54, 201, 222, 279
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 54, 201, 222, 279
FspBI CTAG 2 cut(s) 164, 350
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 54, 201, 222, 279
HaeIII GGCC 3 cut(s) 124, 162, 246
HapII CCGG 4 cut(s) 159, 174, 282, 312
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HpaII CCGG 4 cut(s) 159, 174, 282, 312
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 154, 271
Hpy188I TCNGA 3 cut(s) 197, 366, 386
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 2 cut(s) 154, 271
HpyAV CCTTC 2 cut(s) 102, 114
HpyCH4III ACNGT 3 cut(s) 133, 139, 378
HpyCH4V TGCA 6 cut(s) 61, 77, 104, 117, 203, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 221
HpyF3I CTNAG 1 cut(s) 225
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 94, 314
Lsp1109I GCAGC 4 cut(s) 40, 187, 233, 265
MaeI CTAG 2 cut(s) 164, 350
MaeIII GTNAC 2 cut(s) 133, 176
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 91
MnlI CCTC 4 cut(s) 52, 55, 193, 372
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 4 cut(s) 159, 174, 282, 312
MspR9I CCNGG 2 cut(s) 234, 312
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 114, 221
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 366
NsbI TGCGCA 1 cut(s) 339
PceI AGGCCT 1 cut(s) 124
PkrI GCNGC 4 cut(s) 55, 202, 223, 280
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 2 cut(s) 106, 119
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 91
SatI GCNGC 4 cut(s) 54, 201, 222, 279
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 234, 312
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 91
SetI ASST 5 cut(s) 91, 103, 185, 202, 226
SfcI CTRYAG 3 cut(s) 82, 102, 115
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 349
Sse8387I CCTGCAGG 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 5, 219
SspMI CTAG 2 cut(s) 164, 350
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 232, 310
StyI CCWWGG 2 cut(s) 163, 247
TaaI ACNGT 3 cut(s) 133, 139, 378
TseI GCWGC 4 cut(s) 53, 200, 221, 278
TspDTI ATGAA 2 cut(s) 336, 345
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 2 cut(s) 153, 270
XspI CTAG 2 cut(s) 164, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.