Rorug06G0307700
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001596
Physical Location & Seq
Forward (+)
45875286 .. 45968982
93697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0307700.1

Sequence Viewer

Length: 585 bp
ATGGACATCAGGGGGAGAGAGGTCATTGGAAGTTATTCTGTGGAGGCGAGGAAGCTAAGTTTGGGCCTTTCGGAACTTATATGTGAAGGTTTAGGACTCGAATCTGGATTTTTTGGTGATGAACTTACCCAAGTGCAAGTAATGGCTTTGAATCATTACCCGCCTTGCCCCAACCCTAGCATAACCTTGGGATTACTTAAACATTGCGATAGCAACCTCTTAACTCTGCTTATACATGAACAAGAGGTTCATGGTCTTCAAGTCTTCAAAGATGAGCAGTGGTTCGTTGTTGAGCCTGTCCCTGATGCCTTTGTGGTTAATATAGGCCACACTTTACAGATTATCAGCAATGGGAAGCTATGCAGTGCCAAGCACAGAATTGTGACAAACAAAAAGGCTTCAAGGACGACAGTCGCCAGCTACATCAATCCATCCAACAACTGCCAAATTGAACCTGCAAAAGCACTACTAGTTAAGGACTTAAGTCCTCCACTCTACAGAGCTTTTGCATACAAGGATTTTCTTAGCTCCTATGTAACAGATACTCATCAAGAAGTACCGCCACTTGAGCGTTACACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

194

Amino Acids

21.62

Weight (kDa)

5.96

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 46 - 144 6.2e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AciI CCGC 2 cut(s) 161, 560
AfaI GTAC 1 cut(s) 558
AflII CTTAAG 1 cut(s) 481
AgsI TTSAA 5 cut(s) 151, 260, 268, 402, 452
AhlI ACTAGT 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 5 cut(s) 55, 358, 420, 503, 528
AluI AGCT 5 cut(s) 55, 358, 420, 503, 528
AoxI GGCC 2 cut(s) 64, 325
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 128
BbsI GAAGAC 2 cut(s) 248, 256
BccI CCATC 1 cut(s) 439
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 2 cut(s) 177, 470
BfmI CTRYAG 1 cut(s) 496
BfrI CTTAAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 2 cut(s) 410, 483
BpiI GAAGAC 2 cut(s) 248, 256
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 202, 355
Bse8I GATNNNNATC 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 431
BseJI GATNNNNATC 1 cut(s) 546
BseMI GCAATG 2 cut(s) 202, 355
BshFI GGCC 2 cut(s) 66, 327
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 66, 327
BspACI CCGC 2 cut(s) 161, 560
BspANI GGCC 2 cut(s) 66, 327
BspMI ACCTGC 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 202, 355
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 412
BstAFI CTTAAG 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 56, 524
BstF5I GGATG 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstPAI GACNNNNGTC 2 cut(s) 410, 483
BstSFI CTRYAG 1 cut(s) 496
BstV2I GAAGAC 2 cut(s) 248, 256
BsuRI GGCC 2 cut(s) 66, 327
BtsCI GGATG 1 cut(s) 431
BtsI GCAGTG 2 cut(s) 284, 370
BtsIMutI CAGTG 2 cut(s) 284, 370
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 557
CviAII CATG 2 cut(s) 236, 251
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 2 cut(s) 56, 524
Eco130I CCWWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 239, 254
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 235, 250
FauI CCCGC 1 cut(s) 168
FokI GGATG 1 cut(s) 418
FspBI CTAG 2 cut(s) 177, 470
HaeIII GGCC 2 cut(s) 66, 327
Hin1II CATG 2 cut(s) 239, 254
HinfI GANTC 3 cut(s) 96, 101, 151
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 105, 551
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 136, 363, 458, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
HpyF3I CTNAG 2 cut(s) 56, 524
Hsp92II CATG 2 cut(s) 239, 254
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 5 cut(s) 90, 309, 315, 430, 468
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 177, 470
MaeIII GTNAC 3 cut(s) 382, 535, 572
MboII GAAGA 2 cut(s) 248, 256
MluCI AATT 2 cut(s) 378, 447
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 6 cut(s) 13, 37, 42, 227, 238, 498
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 5 cut(s) 198, 221, 318, 474, 482
MspCI CTTAAG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 568
NlaIII CATG 2 cut(s) 239, 254
NmuCI GTSAC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 101, 151
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshAI GACNNNNGTC 2 cut(s) 410, 483
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
SaqAI TTAA 5 cut(s) 198, 221, 318, 474, 482
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 496
SmlI CTYRAG 2 cut(s) 481, 566
SmoI CTYRAG 2 cut(s) 481, 566
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 2 cut(s) 378, 447
SsiI CCGC 2 cut(s) 161, 560
SspMI CTAG 2 cut(s) 177, 470
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 378, 447
TfiI GAWTC 2 cut(s) 101, 151
Tru1I TTAA 5 cut(s) 198, 221, 318, 474, 482
Tru9I TTAA 5 cut(s) 198, 221, 318, 474, 482
TscAI CASTG 2 cut(s) 284, 370
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 135, 239, 252
TspRI CASTG 2 cut(s) 284, 370
Vha464I CTTAAG 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 177, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.