Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

17817866 .. 17818342

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTTCTTCTAGTGGAACATCCTCTGTTTCCTCCATGATTCAAAACTCTGGCTCTGAAGAAGACTTGCAGGCTCTGATGGATCAGAGAAAAAGAAAGAGAATGTTGTCGAATCGTGAATCTGCAAGAAGGTCTAGGATGAGGAAACAGAAGCACTTGGATGATCTGACGGCGCAGATGGCTCAGCTGAGGAAGGAGAACCACCAGATCATCAGCAGCCTCAACATCACAAGCCAGCATTACATGAACATTGAGGCTGAGAACTCTGTGCTCAGAGCCCAAGTGTCTGAGCTCAGCAACAGGCTGCAGTCTCTGAATGAGATCATCGCTTTCTTGAATGCAAACCATGGTGGTTTTGTTGAGGATTCAAGCAACAACAACTTCACTGAGCCTAGTGCTGATTGCTTCTTCAACCCTTTGAATCTTTCATATCTGAACCATCCCATCATGGCTTCTGCAGAGATGTTTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

158

Amino Acids

17.93

Weight (kDa)

6.51

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	28 - 70	1.3e-06	Basic region leucine zipper
bZIP_1	PF00170	30 - 87	8.7e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	44, 337, 369, 412, 421
AluBI	AGCT	2 cut(s)	187, 292
AluI	AGCT	2 cut(s)	187, 292
Alw21I	GWGCWC	2 cut(s)	273, 294
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	2 cut(s)	76, 313
ApeKI	GCWGC	2 cut(s)	216, 304
AspLEI	GCGC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	280, 294
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	273, 294
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	228, 291
BccI	CCATC	4 cut(s)	73, 172, 447, 452
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	3 cut(s)	12, 135, 393
BfmI	CTRYAG	2 cut(s)	305, 456
BisI	GCNGC	2 cut(s)	217, 305
BlpI	GCTNAGC	2 cut(s)	183, 293
BlsI	GCNGC	2 cut(s)	218, 306
BmcAI	AGTACT	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	2 cut(s)	183, 293
BsaJI	CCNNGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	4 cut(s)	20, 144, 166, 439
BseMII	CTCAG	7 cut(s)	179, 197, 249, 279, 286, 307, 378
BseXI	GCAGC	2 cut(s)	228, 291
BsiHKAI	GWGCWC	2 cut(s)	273, 294
BsmAI	GTCTC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	343
Bsp1286I	GDGCHC	3 cut(s)	273, 280, 294
Bsp143I	GATC	4 cut(s)	82, 163, 207, 321
Bsp1720I	GCTNAGC	2 cut(s)	183, 293
Bsp19I	CCATGG	1 cut(s)	346
BspCNI	CTCAG	7 cut(s)	180, 196, 250, 280, 285, 306, 379
BspMAI	CTGCAG	2 cut(s)	309, 460
BspPI	GGATC	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	4 cut(s)	82, 163, 207, 321
BssT1I	CCWWGG	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	72, 236
BstDEI	CTNAG	7 cut(s)	183, 188, 258, 272, 288, 293, 387
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	4 cut(s)	20, 144, 166, 439
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	85, 166, 210, 324
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	82, 163, 207, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSFI	CTRYAG	2 cut(s)	305, 456
BstV1I	GCAGC	2 cut(s)	228, 291
BstV2I	GAAGAC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	20, 144, 166, 439
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	72, 236
CaiI	CAGNNNCTG	2 cut(s)	76, 313
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	37, 244, 347, 448
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	7 cut(s)	183, 188, 258, 272, 288, 293, 387
DpnI	GATC	4 cut(s)	84, 165, 209, 323
DpnII	GATC	4 cut(s)	82, 163, 207, 321
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	2 cut(s)	280, 294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	280, 294
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	4 cut(s)	40, 247, 350, 451
FaiI	YATR	5 cut(s)	38, 245, 348, 430, 449
FatI	CATG	4 cut(s)	36, 243, 346, 447
Fnu4HI	GCNGC	2 cut(s)	217, 305
FokI	GGATG	4 cut(s)	7, 151, 173, 426
FriOI	GRGCYC	2 cut(s)	280, 294
Fsp4HI	GCNGC	2 cut(s)	217, 305
FspBI	CTAG	3 cut(s)	12, 135, 393
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	217, 305
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	40, 247, 350, 451
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	5 cut(s)	40, 112, 119, 365, 421
Hpy188I	TCNGA	8 cut(s)	58, 78, 87, 168, 275, 289, 315, 435
Hpy188III	TCNNGA	2 cut(s)	116, 334
HpyAV	CCTTC	2 cut(s)	123, 187
HpyCH4V	TGCA	5 cut(s)	70, 125, 307, 341, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	7 cut(s)	183, 188, 258, 272, 288, 293, 387
Hsp92II	CATG	4 cut(s)	40, 247, 350, 451
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	82, 163, 207, 321
LpnPI	CCDG	5 cut(s)	36, 56, 218, 248, 286
Lsp1109I	GCAGC	2 cut(s)	228, 291
MaeI	CTAG	3 cut(s)	12, 135, 393
MalI	GATC	4 cut(s)	84, 165, 209, 323
MboI	GATC	4 cut(s)	82, 163, 207, 321
MboII	GAAGA	3 cut(s)	71, 74, 400
MhlI	GDGCHC	3 cut(s)	273, 280, 294
MnlI	CCTC	7 cut(s)	34, 43, 135, 183, 230, 247, 355
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	82, 163, 207, 321
NlaIII	CATG	4 cut(s)	40, 247, 350, 451
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	5 cut(s)	40, 112, 119, 365, 421
PkrI	GCNGC	2 cut(s)	218, 306
Psp124BI	GAGCTC	1 cut(s)	294
PstI	CTGCAG	2 cut(s)	309, 460
PstNI	CAGNNNCTG	2 cut(s)	76, 313
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	2 cut(s)	217, 305
Sau3AI	GATC	4 cut(s)	82, 163, 207, 321
ScaI	AGTACT	1 cut(s)	473
SduI	GDGCHC	3 cut(s)	273, 280, 294
SetI	ASST	3 cut(s)	134, 189, 294
SfcI	CTRYAG	2 cut(s)	305, 456
SmiMI	CAYNNNNRTG	1 cut(s)	159
SspMI	CTAG	3 cut(s)	12, 135, 393
SstI	GAGCTC	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	346
TaqI	TCGA	1 cut(s)	110
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	5 cut(s)	40, 112, 119, 365, 421
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	216, 304
TspDTI	ATGAA	2 cut(s)	260, 417
TspRI	CASTG	1 cut(s)	391
XspI	CTAG	3 cut(s)	12, 135, 393
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.