Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

10952666 .. 10953436

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1062200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACTCCAGTTCTGAGTGAAACCCTTCTCTCCGAGTGCATGATAAATTCCACATACAGGCGCAGGACCCATTTAGTTCAATCCTTCTCTGTCGTCTTCCTTTACTGGCTTTATTACTTTTTTCTGTGGTTTTTATCAATGGCTCCGTCCAGTGGGACATCTTCAGGCTCCTCCTCCATGAGTCATCAAAACTCAGGCTCTGAGGAAGACTTGATGGCTCTGATGGACCAGAGGAAGAGGAAGAGAATGGTTTCGAACCGCGAATCGGCTAGGCGGTCTAGGTTGAGGAAGCAGAAGCACTTGGATGATCTGACGGGCCAGATCAACCAACTGAAGAAGGAGAACCATCAGATCATCTCCAGCCTCAACATCACAAGCCAGCATTACATGAACATGGAGGCAGAGAACTCTGTTCTCAGAGCCCAAGCTGATGAGCTCAGCAGCAGATTGCAGTCCCTCAATGAGATTGCCAGTTTCTTGAATGCAAACAATGGTGGGCTCTATGCAGCTGCTGCAGATTCAAGCTGCTTCAATGAGCCTAATAGCAGTTTCTTCGACCCCTTGAATCTGTCAAATCTTAATCAGCCTATTATGGCCTCTGCAGATATGTTTCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

207

Amino Acids

23.47

Weight (kDa)

7.02

Isoelectric Point (pI)

72.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	76 - 118	2.1e-07	Basic region leucine zipper
bZIP_1	PF00170	78 - 136	1.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	259, 274
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	147, 353
AfiI	CCNNNNNNNGG	3 cut(s)	57, 152, 265
AgsI	TTSAA	5 cut(s)	80, 481, 522, 532, 565
AluBI	AGCT	4 cut(s)	428, 436, 509, 525
AluI	AGCT	4 cut(s)	428, 436, 509, 525
Alw21I	GWGCWC	1 cut(s)	438
AlwNI	CAGNNNCTG	2 cut(s)	200, 512
AoxI	GGCC	2 cut(s)	316, 594
ApeKI	GCWGC	5 cut(s)	441, 506, 509, 512, 525
ApoI	RAATTY	1 cut(s)	46
Asp700I	GAANNNNTTC	2 cut(s)	24, 250
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	3 cut(s)	66, 226, 316
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	66, 226
BanII	GRGCYC	3 cut(s)	424, 438, 501
BbsI	GAAGAC	2 cut(s)	88, 213
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	453, 496, 499, 512, 518
BccI	CCATC	3 cut(s)	208, 217, 354
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BfaI	CTAG	2 cut(s)	270, 279
BfmI	CTRYAG	2 cut(s)	513, 600
BisI	GCNGC	5 cut(s)	442, 507, 510, 513, 526
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	5 cut(s)	443, 508, 511, 514, 527
Bme18I	GGWCC	2 cut(s)	66, 226
BmgT120I	GGNCC	3 cut(s)	66, 226, 316
BmiI	GGNNCC	3 cut(s)	68, 144, 169
BpiI	GAAGAC	2 cut(s)	88, 213
BpmI	CTGGAG	1 cut(s)	343
Bpu1102I	GCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 152, 265
Bse1I	ACTGG	4 cut(s)	8, 110, 150, 471
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	57, 152, 265
BseMII	CTCAG	5 cut(s)	5, 192, 207, 430, 451
BseNI	ACTGG	4 cut(s)	8, 110, 150, 471
BseRI	GAGGAG	2 cut(s)	160, 163
BseXI	GCAGC	5 cut(s)	453, 496, 499, 512, 518
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	318, 596
BsiHKAI	GWGCWC	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	169, 439
BslI	CCNNNNNNNGG	3 cut(s)	57, 152, 265
BsmFI	GGGAC	2 cut(s)	169, 439
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	318, 596
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	424, 438, 501
Bsp143I	GATC	3 cut(s)	307, 321, 351
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	2 cut(s)	259, 274
BspANI	GGCC	2 cut(s)	318, 596
BspCNI	CTCAG	5 cut(s)	6, 193, 206, 429, 450
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	68, 144, 169
BspMAI	CTGCAG	2 cut(s)	517, 604
BspT104I	TTCGAA	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	8, 110, 150, 471
BssMI	GATC	3 cut(s)	307, 321, 351
Bst6I	CTCTTC	2 cut(s)	230, 236
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	5 cut(s)	14, 193, 201, 416, 437
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	310, 324, 354
BstMBI	GATC	3 cut(s)	307, 321, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstSFI	CTRYAG	2 cut(s)	513, 600
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	453, 496, 499, 512, 518
BstV2I	GAAGAC	2 cut(s)	88, 213
BsuRI	GGCC	2 cut(s)	318, 596
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	2 cut(s)	200, 512
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	66, 226, 316
CviAII	CATG	4 cut(s)	40, 178, 388, 394
DdeI	CTNAG	5 cut(s)	14, 193, 201, 416, 437
DpnI	GATC	3 cut(s)	309, 323, 353
DpnII	GATC	3 cut(s)	307, 321, 351
Eam1104I	CTCTTC	2 cut(s)	230, 236
EarI	CTCTTC	2 cut(s)	230, 236
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	3 cut(s)	424, 438, 501
Eco47I	GGWCC	2 cut(s)	66, 226
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	147, 353
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT38I	GRGCYC	3 cut(s)	424, 438, 501
FaeI	CATG	4 cut(s)	43, 181, 391, 397
FaiI	YATR	8 cut(s)	41, 55, 179, 389, 395, 504, 593, 608
FaqI	GGGAC	2 cut(s)	169, 439
FatI	CATG	4 cut(s)	39, 177, 387, 393
Fnu4HI	GCNGC	5 cut(s)	442, 507, 510, 513, 526
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	3 cut(s)	424, 438, 501
Fsp4HI	GCNGC	5 cut(s)	442, 507, 510, 513, 526
FspBI	CTAG	2 cut(s)	270, 279
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	442, 507, 510, 513, 526
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	318, 596
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	43, 181, 391, 397
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	5 cut(s)	4, 181, 263, 518, 565
Hpy188I	TCNGA	7 cut(s)	15, 34, 202, 222, 312, 351, 419
Hpy188III	TCNNGA	1 cut(s)	478
HpyAV	CCTTC	3 cut(s)	35, 94, 331
HpyCH4V	TGCA	6 cut(s)	39, 451, 485, 506, 515, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	14, 193, 201, 416, 437
Hsp92II	CATG	4 cut(s)	43, 181, 391, 397
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	307, 321, 351
LmnI	GCTCC	2 cut(s)	148, 173
Lsp1109I	GCAGC	5 cut(s)	453, 496, 499, 512, 518
MaeI	CTAG	2 cut(s)	270, 279
MalI	GATC	3 cut(s)	309, 323, 353
MboI	GATC	3 cut(s)	307, 321, 351
MboII	GAAGA	7 cut(s)	88, 153, 218, 247, 253, 346, 544
MhlI	GDGCHC	3 cut(s)	424, 438, 501
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	190
MroXI	GAANNNNTTC	2 cut(s)	24, 250
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	303, 392
MspA1I	CMGCKG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	487
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	3 cut(s)	307, 321, 351
NlaIII	CATG	4 cut(s)	43, 181, 391, 397
NlaIV	GGNNCC	3 cut(s)	68, 144, 169
NspV	TTCGAA	1 cut(s)	254
PctI	GAATGC	1 cut(s)	487
PdmI	GAANNNNTTC	2 cut(s)	24, 250
PfeI	GAWTC	3 cut(s)	263, 518, 565
PkrI	GCNGC	5 cut(s)	443, 508, 511, 514, 527
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	68, 144, 169
PspPI	GGNCC	3 cut(s)	66, 226, 316
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	2 cut(s)	517, 604
PstNI	CAGNNNCTG	2 cut(s)	200, 512
PvuII	CAGCTG	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	303, 392
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	5 cut(s)	442, 507, 510, 513, 526
Sau3AI	GATC	3 cut(s)	307, 321, 351
Sau96I	GGNCC	3 cut(s)	66, 226, 316
SchI	GAGTC	1 cut(s)	190
SduI	GDGCHC	3 cut(s)	424, 438, 501
SetI	ASST	5 cut(s)	284, 430, 438, 511, 527
SfcI	CTRYAG	2 cut(s)	513, 600
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	2 cut(s)	66, 226
SmiMI	CAYNNNNRTG	2 cut(s)	303, 392
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	2 cut(s)	259, 274
SspMI	CTAG	2 cut(s)	270, 279
SstI	GAGCTC	1 cut(s)	438
TaqI	TCGA	2 cut(s)	254, 555
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	263, 518, 565
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	5 cut(s)	441, 506, 509, 512, 525
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	66, 226
XapI	RAATTY	1 cut(s)	46
XmnI	GAANNNNTTC	2 cut(s)	24, 250
XspI	CTAG	2 cut(s)	270, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.