pycom08g01980
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001596
Physical Location & Seq
Reverse (-)
1450313 .. 1450786
474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01980.1

Sequence Viewer

Length: 474 bp
ATGGCTTCTTCAAGCGGAAATTCCTCTGGTTCCACTCAGCTTCAGAACTCTGGCTCCGAAGGGGATCTGCATCATCTGGTGGATCAAAGAAAGAGAAAACGGATGCAGTCGAACCGCGAATCGGCGCGGAGGTCGCGGATGCGGAAGCAGCAACACCTGGACGATCTGACGGCGCAGGTCACCCAGCTGCGGAAGGAGAACAACCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAATGTCGAGTCGGAAAACTCGGTCTTGAAAGCGCAGATGGCGGAACTCAGCCAGAGACTGGAGTCACTCAACGAGATCCTCGGTTACATCGACGCCGGCGGCGGTTACGGCGGAGACTTTGAAACCACCCCGGTTGCCGATCACAACAACTTCATAAACCCTTGGAACATGCTTTATGTTAACCAACCAATCATGGCCACTGCCGACATGCTTGACCAATACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

5.92

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 28 - 73 4.6e-08 Basic region leucine zipper
bZIP_1 PF00170 30 - 88 4.5e-11 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 304
AccII CGCG 3 cut(s) 117, 127, 136
AclWI GGATC 3 cut(s) 72, 90, 316
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 121, 189, 304
AgsI TTSAA 3 cut(s) 12, 274, 368
AjnI CCWGG 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 2 cut(s) 40, 187
AluI AGCT 2 cut(s) 40, 187
Alw26I GTCTC 2 cut(s) 295, 354
AlwI GGATC 3 cut(s) 72, 90, 316
AlwNI CAGNNNCTG 1 cut(s) 304
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 148, 187
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 3 cut(s) 127, 175, 280
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 172, 220
BalI TGGCCA 1 cut(s) 443
BbvI GCAGC 2 cut(s) 160, 174
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 186, 370
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 295, 354
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 3 cut(s) 149, 188, 346
BlsI GCNGC 3 cut(s) 150, 189, 347
Bme1390I CCNGG 2 cut(s) 158, 377
BmiI GGNNCC 2 cut(s) 31, 55
BmrFI CCNGG 2 cut(s) 158, 377
BmsI GCATC 3 cut(s) 79, 93, 129
BoxI GACNNNNGTC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 325, 375, 407
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 189, 304
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 325, 375, 407
BseGI GGATG 2 cut(s) 108, 144
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 3 cut(s) 121, 189, 304
BseMII CTCAG 2 cut(s) 50, 307
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 160, 174
BseYI CCCAGC 2 cut(s) 183, 234
Bsh1236I CGCG 3 cut(s) 117, 127, 136
BshFI GGCC 1 cut(s) 443
BsiSI CCGG 2 cut(s) 342, 377
BslI CCNNNNNNNGG 3 cut(s) 121, 189, 304
BsmAI GTCTC 2 cut(s) 295, 354
BsnI GGCC 1 cut(s) 443
Bsp143I GATC 5 cut(s) 64, 82, 163, 321, 385
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 49, 306
BspFNI CGCG 3 cut(s) 117, 127, 136
BspLI GGNNCC 2 cut(s) 31, 55
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 72, 90, 316
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 325, 375, 407
BssMI GATC 5 cut(s) 64, 82, 163, 321, 385
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 36, 293
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 2 cut(s) 108, 144
BstFNI CGCG 3 cut(s) 117, 127, 136
BstHHI GCGC 3 cut(s) 127, 175, 280
BstKTI GATC 5 cut(s) 67, 85, 166, 324, 388
BstMAI GTCTC 2 cut(s) 295, 354
BstMBI GATC 5 cut(s) 64, 82, 163, 321, 385
BstMWI GCNNNNNNNGC 4 cut(s) 133, 148, 284, 354
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 418, 457
BstPAI GACNNNNGTC 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 156, 375
BstUI CGCG 3 cut(s) 117, 127, 136
BstV1I GCAGC 2 cut(s) 160, 174
BstX2I RGATCY 2 cut(s) 64, 321
BstYI RGATCY 2 cut(s) 64, 321
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 2 cut(s) 108, 144
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 304
CfoI GCGC 3 cut(s) 127, 175, 280
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 244, 415, 439, 454
CviJI RGCY 6 cut(s) 5, 40, 54, 187, 297, 443
CviKI_1 RGCY 6 cut(s) 5, 40, 54, 187, 297, 443
DdeI CTNAG 2 cut(s) 36, 293
DpnI GATC 5 cut(s) 66, 84, 165, 323, 387
DpnII GATC 5 cut(s) 64, 82, 163, 321, 385
EaeI YGGCCR 1 cut(s) 441
EciI GGCGGA 2 cut(s) 302, 372
Eco130I CCWWGG 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 26
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 4 cut(s) 247, 418, 442, 457
FaiI YATR 7 cut(s) 221, 245, 401, 416, 423, 440, 455
FatI CATG 4 cut(s) 243, 414, 438, 453
Fnu4HI GCNGC 3 cut(s) 149, 188, 346
FokI GGATG 2 cut(s) 115, 151
Fsp4HI GCNGC 3 cut(s) 149, 188, 346
GlaI GCGC 3 cut(s) 126, 174, 279
GluI GCNGC 3 cut(s) 149, 188, 346
GsaI CCCAGC 2 cut(s) 187, 238
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 342, 377
HgaI GACGC 1 cut(s) 347
HhaI GCGC 3 cut(s) 127, 175, 280
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 4 cut(s) 247, 418, 442, 457
Hin6I GCGC 3 cut(s) 125, 173, 278
HinP1I GCGC 3 cut(s) 125, 173, 278
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 3 cut(s) 119, 254, 308
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 2 cut(s) 342, 377
HphI GGTGA 2 cut(s) 172, 220
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 45, 58, 168, 259
Hpy188III TCNNGA 2 cut(s) 211, 271
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 53, 187
HpyCH4V TGCA 2 cut(s) 70, 106
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 148, 284, 354
HpyF3I CTNAG 2 cut(s) 36, 293
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 4 cut(s) 247, 418, 442, 457
HspAI GCGC 3 cut(s) 125, 173, 278
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 427
Kzo9I GATC 5 cut(s) 64, 82, 163, 321, 385
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 2 cut(s) 160, 174
LweI GCATC 3 cut(s) 79, 93, 129
MaeIII GTNAC 4 cut(s) 178, 309, 329, 350
MalI GATC 5 cut(s) 66, 84, 165, 323, 387
MboI GATC 5 cut(s) 64, 82, 163, 321, 385
MflI RGATCY 2 cut(s) 64, 321
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 263, 317
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 34, 123, 335
Mox20I TGGCCA 1 cut(s) 443
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 426, 472
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 342, 377
MspR9I CCNGG 2 cut(s) 158, 377
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 3 cut(s) 117, 127, 136
MwoI GCNNNNNNNGC 4 cut(s) 133, 148, 284, 354
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 1 cut(s) 377
NdeII GATC 5 cut(s) 64, 82, 163, 321, 385
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 247, 418, 442, 457
NlaIV GGNNCC 2 cut(s) 31, 55
NmuCI GTSAC 2 cut(s) 178, 309
NspI RCATGY 2 cut(s) 418, 457
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 3 cut(s) 150, 189, 347
PleI GAGTC 2 cut(s) 262, 316
PpsI GAGTC 2 cut(s) 262, 316
PshAI GACNNNNGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 178
PspFI CCCAGC 2 cut(s) 183, 234
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 31, 55
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 2 cut(s) 64, 321
PvuII CAGCTG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 426, 472
SatI GCNGC 3 cut(s) 149, 188, 346
Sau3AI GATC 5 cut(s) 64, 82, 163, 321, 385
SchI GAGTC 2 cut(s) 263, 317
ScrFI CCNGG 2 cut(s) 158, 377
SetI ASST 5 cut(s) 42, 134, 159, 180, 189
SfaNI GCATC 3 cut(s) 79, 93, 129
SgrAI CRCCGGYG 1 cut(s) 341
Sse9I AATT 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 156, 375
StyI CCWWGG 1 cut(s) 407
TaqI TCGA 3 cut(s) 110, 252, 336
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 19
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 426, 472
Tru9I TTAA 2 cut(s) 426, 472
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 2 cut(s) 178, 309
TseI GCWGC 2 cut(s) 148, 187
Tsp45I GTSAC 2 cut(s) 178, 309
TspDTI ATGAA 2 cut(s) 260, 388
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 304
XapI RAATTY 1 cut(s) 19
XceI RCATGY 2 cut(s) 418, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.