Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

6364317 .. 6364655

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGAAGCAGAAGCACTTGGATGATCGGACCTGCCAGATCAACCAGCTGAAGAAGGAGAACCATCAGATCATCTCCAGCCTCAACATCACAAGCCAGCATTACATGAACATTGAGGCAGAGAACTCCGTTCTCAGAGCCCAAGCTGACGAGCTCAGCGGCAGATTGCAGTCCCTCGATGAGATTGCCAGTTTCTTGAATGCAAACAATGGTGGGCTCCATGCAGCTGCTGCAGATTCAAGCTGCTTCAACGAGCCTAATAACAGTTTCTTCGACCCCTTGAATCTGTCAAATCTTAATCAGCCTATTATGGCCTCTGCAGATATGTTTCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

5.36

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AciI	CCGC	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	199, 240, 250, 283
AluBI	AGCT	5 cut(s)	49, 146, 154, 227, 243
AluI	AGCT	5 cut(s)	49, 146, 154, 227, 243
Alw21I	GWGCWC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	4 cut(s)	224, 227, 230, 243
AspS9I	GGNCC	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	30
BanII	GRGCYC	3 cut(s)	142, 156, 219
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	214, 217, 230, 236
BccI	CCATC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BfmI	CTRYAG	2 cut(s)	231, 318
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	5 cut(s)	160, 225, 228, 231, 244
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	5 cut(s)	161, 226, 229, 232, 245
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	148, 169
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	214, 217, 230, 236
BshFI	GGCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	142, 156, 219
Bsp143I	GATC	3 cut(s)	25, 39, 69
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	147, 168
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	2 cut(s)	235, 322
BspMI	ACCTGC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	25, 39, 69
Bst4CI	ACNGT	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	134, 155
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	28, 42, 72
BstMBI	GATC	3 cut(s)	25, 39, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSFI	CTRYAG	2 cut(s)	231, 318
BstV1I	GCAGC	4 cut(s)	214, 217, 230, 236
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	30
CviAII	CATG	2 cut(s)	106, 221
DdeI	CTNAG	2 cut(s)	134, 155
DpnI	GATC	3 cut(s)	27, 41, 71
DpnII	GATC	3 cut(s)	25, 39, 69
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	3 cut(s)	142, 156, 219
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	154
EcoT38I	GRGCYC	3 cut(s)	142, 156, 219
FaeI	CATG	2 cut(s)	109, 224
FaiI	YATR	4 cut(s)	107, 222, 311, 326
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	105, 220
Fnu4HI	GCNGC	5 cut(s)	160, 225, 228, 231, 244
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	3 cut(s)	142, 156, 219
Fsp4HI	GCNGC	5 cut(s)	160, 225, 228, 231, 244
GluI	GCNGC	5 cut(s)	160, 225, 228, 231, 244
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	109, 224
HinfI	GANTC	2 cut(s)	236, 283
Hpy188I	TCNGA	3 cut(s)	30, 69, 137
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	5 cut(s)	169, 203, 224, 233, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	134, 155
Hsp92II	CATG	2 cut(s)	109, 224
Kzo9I	GATC	3 cut(s)	25, 39, 69
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	6 cut(s)	46, 50, 59, 91, 110, 202
Lsp1109I	GCAGC	4 cut(s)	214, 217, 230, 236
MalI	GATC	3 cut(s)	27, 41, 71
MboI	GATC	3 cut(s)	25, 39, 69
MboII	GAAGA	2 cut(s)	64, 262
MhlI	GDGCHC	3 cut(s)	142, 156, 219
MnlI	CCTC	4 cut(s)	92, 109, 185, 325
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	3 cut(s)	49, 159, 227
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	3 cut(s)	25, 39, 69
NlaIII	CATG	2 cut(s)	109, 224
NlaIV	GGNNCC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	236, 283
PkrI	GCNGC	5 cut(s)	161, 226, 229, 232, 245
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	235, 322
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	49, 227
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	5 cut(s)	160, 225, 228, 231, 244
Sau3AI	GATC	3 cut(s)	25, 39, 69
Sau96I	GGNCC	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	142, 156, 219
SetI	ASST	6 cut(s)	35, 51, 148, 156, 229, 245
SfcI	CTRYAG	2 cut(s)	231, 318
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	21
SsiI	CCGC	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	177, 273
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	236, 283
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	4 cut(s)	224, 227, 230, 243
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.