MD02G1140600.v1.1
BZIP Family

Ocs element-binding factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001596
Physical Location & Seq
Reverse (-)
11699473 .. 11700207
735 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1140600.v1.1.491

Sequence Viewer

Length: 567 bp
ATGTTTCCGGTACTCAGTGAAATCCTGCTCTCTGGGTGTATGATAAACTCCACCCTCCTTCGCAGAACCCACCTTGTCCAATCCTTCTCTGTTGTTTTCCTCTACTGTGGGGTTTCTTCAGAGTCAAGCAAGCTCCAAAACTCAGGATCTGATGAAGATCTTAACCAAGTCATGGACCAGAGAAAGCGCAAAAGAATGCTGTCCAACCGGGAATCGGCACGTCGATCCCGGATGCGAAAACAGGAGCATCTGACTGATCTGACGGCTCAGATTGGTCTCCTGACAAGGGATAACAACCAGATCATCACATCCATGAACGTGACCAACCAGCTTTACATGAAGCTCGAGGCAGAAAACTCAGTCCTCAGAGCTCAGATGGATGAGCTCACAAACAGATTGCAGTCTCTCAATGATATTATGGATTGTATTAATTCAAGCAAATGGATCTATGAGGAAGAAGATAATCATAATATTATTGGTGGAGGTGATGGGTTTCTGAACCCATGGGGTACTGGCTTTTTGAATAATCAACCAATCATGGCCTCTGCAGACATGTTTATGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

189

Amino Acids

21.46

Weight (kDa)

5.63

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 59 - 101 4.6e-06 Basic region leucine zipper
bZIP_1 PF00170 61 - 119 3.9e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AclWI GGATC 3 cut(s) 154, 219, 452
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 2 cut(s) 12, 511
AfiI CCNNNNNNNGG 3 cut(s) 172, 214, 286
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 2 cut(s) 435, 523
AjiI CACGTC 1 cut(s) 221
AluBI AGCT 5 cut(s) 133, 331, 343, 371, 385
AluI AGCT 5 cut(s) 133, 331, 343, 371, 385
Alw21I GWGCWC 2 cut(s) 373, 387
Alw26I GTCTC 2 cut(s) 281, 408
AlwI GGATC 3 cut(s) 154, 219, 452
AlwNI CAGNNNCTG 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 540
AseI ATTAAT 1 cut(s) 429
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 209, 229
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 373, 387
Bbv12I GWGCWC 2 cut(s) 373, 387
BccI CCATC 2 cut(s) 370, 482
BceAI ACGGC 1 cut(s) 279
BcnI CCSGG 2 cut(s) 209, 229
BcoDI GTCTC 2 cut(s) 281, 408
BfmI CTRYAG 1 cut(s) 546
BglII AGATCT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 209, 229
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 209, 229
BmsI GCATC 2 cut(s) 222, 256
BpuMI CCSGG 2 cut(s) 209, 229
BsaBI GATNNNNATC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 214, 286
Bse1I ACTGG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 3 cut(s) 237, 308, 385
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 172, 214, 286
BseMII CTCAG 6 cut(s) 28, 156, 281, 372, 379, 386
BseNI ACTGG 1 cut(s) 517
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 373, 387
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 3 cut(s) 8, 208, 229
BslI CCNNNNNNNGG 3 cut(s) 172, 214, 286
BsmAI GTCTC 2 cut(s) 281, 408
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 373, 387
Bsp143I GATC 6 cut(s) 146, 157, 224, 256, 300, 444
Bsp19I CCATGG 1 cut(s) 503
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 6 cut(s) 27, 155, 280, 371, 378, 385
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 3 cut(s) 154, 219, 452
BspTNI GGTCTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 6 cut(s) 146, 157, 224, 256, 300, 444
BssT1I CCWWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 6 cut(s) 14, 142, 267, 358, 365, 372
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 237, 308, 385
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 6 cut(s) 149, 160, 227, 259, 303, 447
BstMAI GTCTC 2 cut(s) 281, 408
BstMBI GATC 6 cut(s) 146, 157, 224, 256, 300, 444
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 207, 227
BstSFI CTRYAG 1 cut(s) 546
BstX2I RGATCY 3 cut(s) 146, 157, 444
BstYI RGATCY 3 cut(s) 146, 157, 444
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 503
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 237, 308, 385
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 131
CaiI CAGNNNCTG 1 cut(s) 149
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 11, 510
CviAII CATG 6 cut(s) 172, 313, 337, 504, 538, 553
CviJI RGCY 8 cut(s) 133, 266, 331, 343, 371, 385, 516, 542
CviKI_1 RGCY 8 cut(s) 133, 266, 331, 343, 371, 385, 516, 542
CviQI GTAC 2 cut(s) 11, 510
DdeI CTNAG 6 cut(s) 14, 142, 267, 358, 365, 372
DpnI GATC 6 cut(s) 148, 159, 226, 258, 302, 446
DpnII GATC 6 cut(s) 146, 157, 224, 256, 300, 444
Ecl136II GAGCTC 2 cut(s) 371, 385
Eco130I CCWWGG 1 cut(s) 503
Eco24I GRGCYC 2 cut(s) 373, 387
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 2 cut(s) 371, 385
Eco57I CTGAAG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 371, 385
EcoT14I CCWWGG 1 cut(s) 503
EcoT38I GRGCYC 2 cut(s) 373, 387
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 6 cut(s) 175, 316, 340, 507, 541, 556
FatI CATG 6 cut(s) 171, 312, 336, 503, 537, 552
FokI GGATG 3 cut(s) 244, 295, 392
FriOI GRGCYC 2 cut(s) 373, 387
GlaI GCGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 542
HapII CCGG 3 cut(s) 8, 208, 229
HhaI GCGC 1 cut(s) 189
Hin1II CATG 6 cut(s) 175, 316, 340, 507, 541, 556
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 122, 212
HpaII CCGG 3 cut(s) 8, 208, 229
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 8 cut(s) 121, 151, 252, 261, 270, 368, 375, 498
Hpy188III TCNNGA 2 cut(s) 144, 280
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 68, 94
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 2 cut(s) 220, 318
HpyCH4V TGCA 2 cut(s) 400, 548
HpyF3I CTNAG 6 cut(s) 14, 142, 267, 358, 365, 372
HpySE526I ACGT 2 cut(s) 220, 318
Hsp92II CATG 6 cut(s) 175, 316, 340, 507, 541, 556
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 6 cut(s) 146, 157, 224, 256, 300, 444
LmnI GCTCC 2 cut(s) 138, 244
LweI GCATC 2 cut(s) 222, 256
MaeII ACGT 2 cut(s) 220, 318
MaeIII GTNAC 1 cut(s) 319
MalI GATC 6 cut(s) 148, 159, 226, 258, 302, 446
MboI GATC 6 cut(s) 146, 157, 224, 256, 300, 444
MboII GAAGA 4 cut(s) 108, 167, 467, 470
MflI RGATCY 3 cut(s) 146, 157, 444
MhlI GDGCHC 2 cut(s) 373, 387
MluCI AATT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 65, 110, 340, 374, 445, 476, 553
MseI TTAA 2 cut(s) 162, 429
MslI CAYNNNNRTG 3 cut(s) 311, 317, 557
MspI CCGG 3 cut(s) 8, 208, 229
MspR9I CCNGG 2 cut(s) 209, 229
Mva1269I GAATGC 1 cut(s) 201
NciI CCSGG 2 cut(s) 209, 229
NcoI CCATGG 1 cut(s) 503
NdeII GATC 6 cut(s) 146, 157, 224, 256, 300, 444
NlaIII CATG 6 cut(s) 175, 316, 340, 507, 541, 556
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 556
PaeR7I CTCGAG 1 cut(s) 344
PciI ACATGT 1 cut(s) 552
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 227
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 429
Psp124BI GAGCTC 2 cut(s) 373, 387
PspPI GGNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 344
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 3 cut(s) 146, 157, 444
RsaI GTAC 2 cut(s) 12, 511
RsaNI GTAC 2 cut(s) 11, 510
RseI CAYNNNNRTG 3 cut(s) 311, 317, 557
SacI GAGCTC 2 cut(s) 373, 387
SaqAI TTAA 2 cut(s) 162, 429
Sau3AI GATC 6 cut(s) 146, 157, 224, 256, 300, 444
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 209, 229
SduI GDGCHC 2 cut(s) 373, 387
SetI ASST 9 cut(s) 75, 135, 223, 321, 333, 345, 373, 387, 487
SfaNI GCATC 2 cut(s) 222, 256
SfcI CTRYAG 1 cut(s) 546
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 3 cut(s) 311, 317, 557
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 430
SspI AATATT 1 cut(s) 472
SstI GAGCTC 2 cut(s) 373, 387
StyD4I CCNGG 2 cut(s) 207, 227
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 2 cut(s) 223, 321
TaqI TCGA 2 cut(s) 223, 345
TasI AATT 1 cut(s) 430
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 162, 429
Tru9I TTAA 2 cut(s) 162, 429
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 168, 329, 353
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 175
VspI ATTAAT 1 cut(s) 429
XceI RCATGY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.