Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

1297823 .. 1299269

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1022500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGCCAGTTCTCAGTGAAATCCTCCGTTCCGGGTTTATGGTAGATTCCTCCCTCCGGCGCAGAACCCACCTTGTCCAATCTTTCTCCGTCGTCTTCCTCTACTGCGGAAATTCCTCTGGTTCCGCTCAGCTTCAGAACTATGCCTCTGAAGGGGATCTGCATCGTCCGGTGGATCAAAGAAAGAGAAAACGGATGCAATCGAACCGCGAATCGGCGCGGCGGTCGCGGATGCGGAAGCAGCAGCACCTGGACGATCTGATGGCGCAGGTCGCCCAGCTGCGGAAGGAGAACAACCAAATCCTGACCAGCATAAACATCACCACCCAGCACTTCATGAATGTCGAGTCGGAAAACTCGGTATTGAAAGCGCAGATGGGGGAGCTCAGCCAGAGACTGGAGTCCCTCGACGAGATCCTCGGTTACATCAACGGCGGCGTCGGCCACGGCGGAGGCCTTGAAACCACCCCTGTTGCCGATCAGAACAGTTTCATAAACCCTTGGAATATGCTTCATGTGAACCAACCAATCATGGCCACTGCTGACATGCTTCACCAATACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

189

Amino Acids

21.36

Weight (kDa)

8.82

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	59 - 104	7.1e-08	Basic region leucine zipper
bZIP_1	PF00170	61 - 118	5e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	3 cut(s)	210, 220, 229
AclWI	GGATC	3 cut(s)	165, 183, 409
AcoI	YGGCCR	2 cut(s)	442, 534
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	119, 171
AcyI	GRCGYC	1 cut(s)	438
AfiI	CCNNNNNNNGG	5 cut(s)	57, 153, 214, 282, 397
AgsI	TTSAA	2 cut(s)	367, 461
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	133, 280, 385
AluI	AGCT	3 cut(s)	133, 280, 385
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	3 cut(s)	165, 183, 409
AlwNI	CAGNNNCTG	2 cut(s)	250, 397
AoxI	GGCC	3 cut(s)	442, 454, 534
ApeKI	GCWGC	3 cut(s)	241, 244, 280
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	4 cut(s)	63, 220, 268, 373
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	313, 545
BalI	TGGCCA	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	253, 256, 267
BccI	CCATC	2 cut(s)	256, 370
BceAI	ACGGC	2 cut(s)	448, 463
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	221, 242, 245, 281, 436
BlpI	GCTNAGC	2 cut(s)	129, 386
BlsI	GCNGC	5 cut(s)	222, 243, 246, 282, 437
Bme1390I	CCNGG	2 cut(s)	34, 251
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	34, 251
BmsI	GCATC	3 cut(s)	172, 186, 222
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	2 cut(s)	129, 386
BpuMI	CCSGG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	418, 445, 500
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 153, 214, 282, 397
Bse1I	ACTGG	2 cut(s)	8, 402
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	418, 445, 500
BseGI	GGATG	2 cut(s)	201, 237
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	57, 153, 214, 282, 397
BseMII	CTCAG	3 cut(s)	28, 143, 400
BseNI	ACTGG	2 cut(s)	8, 402
BseXI	GCAGC	3 cut(s)	253, 256, 267
BseYI	CCCAGC	2 cut(s)	276, 327
Bsh1236I	CGCG	3 cut(s)	210, 220, 229
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	3 cut(s)	444, 456, 536
BsiEI	CGRYCG	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	33, 58, 170
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	5 cut(s)	57, 153, 214, 282, 397
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	444, 456, 536
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	157, 175, 256, 414, 478
Bsp1720I	GCTNAGC	2 cut(s)	129, 386
BspANI	GGCC	3 cut(s)	444, 456, 536
BspCNI	CTCAG	3 cut(s)	27, 142, 399
BspFNI	CGCG	3 cut(s)	210, 220, 229
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	165, 183, 409
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	8, 402
BssECI	CCNNGG	3 cut(s)	418, 445, 500
BssMI	GATC	5 cut(s)	157, 175, 256, 414, 478
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	14, 129, 386
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	201, 237
BstFNI	CGCG	3 cut(s)	210, 220, 229
BstHHI	GCGC	4 cut(s)	63, 220, 268, 373
BstKTI	GATC	5 cut(s)	160, 178, 259, 417, 481
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	5 cut(s)	157, 175, 256, 414, 478
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 241, 272, 441
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	550
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	32, 249
BstUI	CGCG	3 cut(s)	210, 220, 229
BstV1I	GCAGC	3 cut(s)	253, 256, 267
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	157, 414
BstYI	RGATCY	2 cut(s)	157, 414
BsuRI	GGCC	3 cut(s)	444, 456, 536
BtgI	CCRYGG	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	201, 237
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	22, 537
BveI	ACCTGC	1 cut(s)	259
CaiI	CAGNNNCTG	2 cut(s)	250, 397
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	4 cut(s)	63, 220, 268, 373
CseI	GACGC	1 cut(s)	427
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	337, 515, 532, 547
CviJI	RGCY	7 cut(s)	133, 280, 385, 390, 444, 456, 536
CviKI_1	RGCY	7 cut(s)	133, 280, 385, 390, 444, 456, 536
DdeI	CTNAG	3 cut(s)	14, 129, 386
DpnI	GATC	5 cut(s)	159, 177, 258, 416, 480
DpnII	GATC	5 cut(s)	157, 175, 256, 414, 478
EaeI	YGGCCR	2 cut(s)	442, 534
EciI	GGCGGA	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	500
Eco147I	AGGCCT	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	119, 171
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	4 cut(s)	340, 518, 535, 550
FaiI	YATR	9 cut(s)	41, 144, 314, 338, 494, 509, 516, 533, 548
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	4 cut(s)	336, 514, 531, 546
Fnu4HI	GCNGC	5 cut(s)	221, 242, 245, 281, 436
FokI	GGATG	2 cut(s)	208, 244
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	5 cut(s)	221, 242, 245, 281, 436
GlaI	GCGC	4 cut(s)	62, 219, 267, 372
GluI	GCNGC	5 cut(s)	221, 242, 245, 281, 436
GsaI	CCCAGC	2 cut(s)	280, 331
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	444, 456, 536
HapII	CCGG	3 cut(s)	33, 58, 170
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	4 cut(s)	63, 220, 268, 373
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	340, 518, 535, 550
Hin6I	GCGC	4 cut(s)	61, 218, 266, 371
HinP1I	GCGC	4 cut(s)	61, 218, 266, 371
HinfI	GANTC	4 cut(s)	47, 212, 347, 401
HpaII	CCGG	3 cut(s)	33, 58, 170
HphI	GGTGA	2 cut(s)	313, 545
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	5 cut(s)	138, 151, 261, 352, 483
Hpy188III	TCNNGA	2 cut(s)	304, 337
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	3 cut(s)	95, 413, 443
HpyAV	CCTTC	2 cut(s)	146, 280
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	2 cut(s)	163, 199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 241, 272, 441
HpyF3I	CTNAG	3 cut(s)	14, 129, 386
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	340, 518, 535, 550
HspAI	GCGC	4 cut(s)	61, 218, 266, 371
Kzo9I	GATC	5 cut(s)	157, 175, 256, 414, 478
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	3 cut(s)	253, 256, 267
LweI	GCATC	3 cut(s)	172, 186, 222
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	5 cut(s)	159, 177, 258, 416, 480
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	5 cut(s)	157, 175, 256, 414, 478
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	2 cut(s)	157, 414
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	2 cut(s)	356, 410
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	35, 61, 65, 110, 127, 157, 416, 428, 446
Mox20I	TGGCCA	1 cut(s)	536
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	1 cut(s)	565
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	3 cut(s)	33, 58, 170
MspR9I	CCNGG	2 cut(s)	34, 251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	3 cut(s)	210, 220, 229
MwoI	GCNNNNNNNGC	4 cut(s)	226, 241, 272, 441
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	5 cut(s)	157, 175, 256, 414, 478
NlaIII	CATG	4 cut(s)	340, 518, 535, 550
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	550
PagI	TCATGA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	47, 212
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	222, 243, 246, 282, 437
PleI	GAGTC	2 cut(s)	355, 409
PpsI	GAGTC	2 cut(s)	355, 409
PshAI	GACNNNNGTC	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	276, 327
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	124
PstNI	CAGNNNCTG	2 cut(s)	250, 397
PsuI	RGATCY	2 cut(s)	157, 414
PvuII	CAGCTG	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	5 cut(s)	221, 242, 245, 281, 436
Sau3AI	GATC	5 cut(s)	157, 175, 256, 414, 478
SchI	GAGTC	2 cut(s)	356, 410
ScrFI	CCNGG	2 cut(s)	34, 251
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	6 cut(s)	75, 135, 252, 273, 282, 387
SfaNI	GCATC	3 cut(s)	172, 186, 222
Sse9I	AATT	1 cut(s)	112
SseBI	AGGCCT	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	32, 249
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	203, 345, 408
TasI	AATT	1 cut(s)	112
TauI	GCSGC	2 cut(s)	223, 438
TfiI	GAWTC	2 cut(s)	47, 212
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	2 cut(s)	22, 544
TseI	GCWGC	3 cut(s)	241, 244, 280
TspDTI	ATGAA	4 cut(s)	325, 353, 481, 503
TspGWI	ACGGA	3 cut(s)	17, 79, 208
TspRI	CASTG	2 cut(s)	22, 544
Van91I	CCANNNNNTGG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.