Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

5971602 .. 5972081

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTCCTCCAGTGGGACATCTTCAGGCTCCTCCTCCATGATTCATCAAAACTCAGGCTCTGAGGAAGACTTGACGGCTCTGATGGACCAGAGAAAGAGGAAGAGAATGATTTCCAACCGCGAATCGGCTAGGCGTTCTAGGATGAGGAAGCAGAAGCACTTGGATGATCTGACGGGCCAGATCAGCCAGCTGAAGAAGGACAACGAACAGATCAACACCAGCCTCAACATCACAAGCCAGCATTACATGAACGTTGAGGCAGAGAACTCTGTTCTCAGAGCCCAAGCTGATGAGCTCAGCAACAGATTGCAGTCCCTGAATGAGATTGCCAGTTTCTTGAATGCAAACAATGGTGGGGTCCATGCAGCTGCAGCAGATTCAAGCTGCTTCACTGAGCCTCATGACAGCTTCTTCAACCCTTTGAATCTGTCATATCTTAATCAGCCTATCACGGCCTCTGCAGAGATGTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

160

Amino Acids

17.67

Weight (kDa)

6.19

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	30 - 73	2.4e-07	Basic region leucine zipper
bZIP_1	PF00170	32 - 85	1.7e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	121
AclI	AACGTT	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	9, 215
AfiI	CCNNNNNNNGG	2 cut(s)	15, 127
AgsI	TTSAA	4 cut(s)	343, 384, 418, 427
AluBI	AGCT	6 cut(s)	193, 290, 298, 371, 387, 411
AluI	AGCT	6 cut(s)	193, 290, 298, 371, 387, 411
Alw21I	GWGCWC	1 cut(s)	300
AlwNI	CAGNNNCTG	2 cut(s)	62, 319
AoxI	GGCC	2 cut(s)	178, 456
ApeKI	GCWGC	4 cut(s)	368, 371, 374, 387
Asp700I	GAANNNNTTC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	88, 178, 361
AvaII	GGWCC	2 cut(s)	88, 361
BanII	GRGCYC	2 cut(s)	286, 300
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	358, 374, 380, 386
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	2 cut(s)	93, 471
BfaI	CTAG	2 cut(s)	132, 141
BfmI	CTRYAG	2 cut(s)	372, 462
BisI	GCNGC	4 cut(s)	369, 372, 375, 388
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	4 cut(s)	370, 373, 376, 389
Bme18I	GGWCC	2 cut(s)	88, 361
BmgT120I	GGNCC	3 cut(s)	88, 178, 361
BmiI	GGNNCC	2 cut(s)	31, 362
BpiI	GAAGAC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 127
Bse1I	ACTGG	2 cut(s)	12, 333
BseGI	GGATG	2 cut(s)	150, 172
BseLI	CCNNNNNNNGG	2 cut(s)	15, 127
BseMII	CTCAG	5 cut(s)	54, 69, 292, 313, 387
BseNI	ACTGG	2 cut(s)	12, 333
BseRI	GAGGAG	2 cut(s)	22, 25
BseXI	GCAGC	4 cut(s)	358, 374, 380, 386
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	180, 458
BsiHKAI	GWGCWC	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	31, 301
BslI	CCNNNNNNNGG	2 cut(s)	15, 127
BsmFI	GGGAC	2 cut(s)	31, 301
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	180, 458
Bsp1286I	GDGCHC	2 cut(s)	286, 300
Bsp143I	GATC	3 cut(s)	169, 183, 213
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	180, 458
BspCNI	CTCAG	5 cut(s)	55, 68, 291, 312, 388
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	31, 362
BspMAI	CTGCAG	2 cut(s)	376, 466
BsrI	ACTGG	2 cut(s)	12, 333
BssMI	GATC	3 cut(s)	169, 183, 213
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	191, 242
BstDEI	CTNAG	5 cut(s)	55, 63, 278, 299, 396
BstF5I	GGATG	2 cut(s)	150, 172
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	3 cut(s)	172, 186, 216
BstMBI	GATC	3 cut(s)	169, 183, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 374
BstSFI	CTRYAG	2 cut(s)	372, 462
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	358, 374, 380, 386
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	180, 458
BtsCI	GGATG	2 cut(s)	150, 172
BtsIMutI	CAGTG	2 cut(s)	19, 393
Cac8I	GCNNGC	2 cut(s)	191, 242
CaiI	CAGNNNCTG	2 cut(s)	62, 319
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	3 cut(s)	88, 178, 361
CviAII	CATG	4 cut(s)	40, 250, 365, 404
DdeI	CTNAG	5 cut(s)	55, 63, 278, 299, 396
DpnI	GATC	3 cut(s)	171, 185, 215
DpnII	GATC	3 cut(s)	169, 183, 213
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	2 cut(s)	286, 300
Eco47I	GGWCC	2 cut(s)	88, 361
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	9, 215
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	286, 300
FaeI	CATG	4 cut(s)	43, 253, 368, 407
FaiI	YATR	5 cut(s)	41, 251, 366, 405, 436
FaqI	GGGAC	2 cut(s)	31, 301
FatI	CATG	4 cut(s)	39, 249, 364, 403
Fnu4HI	GCNGC	4 cut(s)	369, 372, 375, 388
FokI	GGATG	2 cut(s)	157, 179
FriOI	GRGCYC	2 cut(s)	286, 300
Fsp4HI	GCNGC	4 cut(s)	369, 372, 375, 388
FspBI	CTAG	2 cut(s)	132, 141
GluI	GCNGC	4 cut(s)	369, 372, 375, 388
HaeIII	GGCC	2 cut(s)	180, 458
Hin1II	CATG	4 cut(s)	43, 253, 368, 407
HinfI	GANTC	4 cut(s)	43, 125, 380, 427
Hpy188I	TCNGA	4 cut(s)	64, 84, 174, 281
Hpy188III	TCNNGA	2 cut(s)	340, 404
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	313, 347, 368, 374, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 374
HpyF3I	CTNAG	5 cut(s)	55, 63, 278, 299, 396
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	43, 253, 368, 407
Kzo9I	GATC	3 cut(s)	169, 183, 213
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	4 cut(s)	358, 374, 380, 386
MaeI	CTAG	2 cut(s)	132, 141
MaeII	ACGT	1 cut(s)	255
MalI	GATC	3 cut(s)	171, 185, 215
MboI	GATC	3 cut(s)	169, 183, 213
MboII	GAAGA	5 cut(s)	15, 80, 115, 208, 406
MhlI	GDGCHC	2 cut(s)	286, 300
MmeI	TCCRAC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	193, 371
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	186, 374
NdeII	GATC	3 cut(s)	169, 183, 213
NlaIII	CATG	4 cut(s)	43, 253, 368, 407
NlaIV	GGNNCC	2 cut(s)	31, 362
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	43, 125, 380, 427
PkrI	GCNGC	4 cut(s)	370, 373, 376, 389
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	31, 362
PspPI	GGNCC	3 cut(s)	88, 178, 361
PstI	CTGCAG	2 cut(s)	376, 466
PstNI	CAGNNNCTG	2 cut(s)	62, 319
PvuII	CAGCTG	2 cut(s)	193, 371
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	4 cut(s)	369, 372, 375, 388
Sau3AI	GATC	3 cut(s)	169, 183, 213
Sau96I	GGNCC	3 cut(s)	88, 178, 361
SduI	GDGCHC	2 cut(s)	286, 300
SetI	ASST	7 cut(s)	195, 258, 292, 300, 373, 389, 413
SfcI	CTRYAG	2 cut(s)	372, 462
SinI	GGWCC	2 cut(s)	88, 361
SmiMI	CAYNNNNRTG	1 cut(s)	165
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	132, 141
SstI	GAGCTC	1 cut(s)	300
TaiI	ACGT	1 cut(s)	258
TfiI	GAWTC	4 cut(s)	43, 125, 380, 427
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	19, 400
TseI	GCWGC	4 cut(s)	368, 371, 374, 387
TspDTI	ATGAA	2 cut(s)	35, 266
TspRI	CASTG	2 cut(s)	19, 400
VpaK11BI	GGWCC	2 cut(s)	88, 361
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	2 cut(s)	132, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.