Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

50365854 .. 50366291

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATTCAAAACTCTGGCTCTGAAGAAGACTTGCAGGCTCTGATGGATCAGAGAAAAAGAAAGAGAATGTTGTCGAATCGTGAATCTGCAAGAAGGTCTAGGATGAGGAAACAGAAGCACTTGGATGATCTGACGGCGCAGATGGCTCAGCTGAGGAAGGAGAACCACCAGATCATCAGCAGCCTCAACATCACAAGCCAGCATTACATGAACATTGAGGCTGAGAACTCTGTCCTCAGAGCCCAAATGTCTGAGCTCAGCAACAGGCTGCAGTCTCTGAATGAGATCATCGCTTTCTTGAATGCGAACCATGGTGGTTTTTTTGAGGATTCAAGCAACAACTTCACTGAGCCTAGTGCTGATTGCTTCTTCAACCCTTTGAATCTTTCATATCTGAACCATCCCATCATGGCTTCCGCAGAGATGTTTCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032055 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043555 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080149 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

145

Amino Acids

16.83

Weight (kDa)

6.51

Isoelectric Point (pI)

71.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	16 - 58	7.3e-07	Basic region leucine zipper
bZIP_1	PF00170	18 - 75	6.2e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	8, 301, 333, 373, 382
AluBI	AGCT	2 cut(s)	151, 256
AluI	AGCT	2 cut(s)	151, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	2 cut(s)	40, 277
ApeKI	GCWGC	2 cut(s)	180, 268
AspLEI	GCGC	1 cut(s)	139
BanII	GRGCYC	2 cut(s)	244, 258
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	192, 255
BccI	CCATC	4 cut(s)	37, 136, 408, 413
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	99, 354
BfmI	CTRYAG	1 cut(s)	269
BisI	GCNGC	2 cut(s)	181, 269
BlpI	GCTNAGC	2 cut(s)	147, 257
BlsI	GCNGC	2 cut(s)	182, 270
BmcAI	AGTACT	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu1102I	GCTNAGC	2 cut(s)	147, 257
BsaJI	CCNNGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	3 cut(s)	108, 130, 400
BseMII	CTCAG	7 cut(s)	143, 161, 213, 243, 250, 271, 339
BseXI	GCAGC	2 cut(s)	192, 255
BsiHKAI	GWGCWC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	244, 258
Bsp143I	GATC	4 cut(s)	46, 127, 171, 285
Bsp1720I	GCTNAGC	2 cut(s)	147, 257
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	417
BspCNI	CTCAG	7 cut(s)	144, 160, 214, 244, 249, 270, 340
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	46, 127, 171, 285
BssT1I	CCWWGG	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	36, 200
BstDEI	CTNAG	7 cut(s)	147, 152, 222, 236, 252, 257, 348
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	108, 130, 400
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	49, 130, 174, 288
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	4 cut(s)	46, 127, 171, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	192, 255
BstV2I	GAAGAC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	108, 130, 400
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	36, 200
CaiI	CAGNNNCTG	2 cut(s)	40, 277
CfoI	GCGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	208, 311, 409
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	7 cut(s)	147, 152, 222, 236, 252, 257, 348
DpnI	GATC	4 cut(s)	48, 129, 173, 287
DpnII	GATC	4 cut(s)	46, 127, 171, 285
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	244, 258
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	244, 258
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	211, 314, 412
FaiI	YATR	4 cut(s)	209, 312, 391, 410
FatI	CATG	3 cut(s)	207, 310, 408
Fnu4HI	GCNGC	2 cut(s)	181, 269
FokI	GGATG	3 cut(s)	115, 137, 387
FriOI	GRGCYC	2 cut(s)	244, 258
Fsp4HI	GCNGC	2 cut(s)	181, 269
FspBI	CTAG	2 cut(s)	99, 354
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	181, 269
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	211, 314, 412
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	5 cut(s)	4, 76, 83, 329, 382
Hpy188I	TCNGA	8 cut(s)	22, 42, 51, 132, 239, 253, 279, 396
Hpy188III	TCNNGA	2 cut(s)	80, 298
HpyAV	CCTTC	2 cut(s)	87, 151
HpyCH4V	TGCA	3 cut(s)	34, 89, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	7 cut(s)	147, 152, 222, 236, 252, 257, 348
Hsp92II	CATG	3 cut(s)	211, 314, 412
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	46, 127, 171, 285
LpnPI	CCDG	4 cut(s)	20, 182, 212, 250
Lsp1109I	GCAGC	2 cut(s)	192, 255
MaeI	CTAG	2 cut(s)	99, 354
MalI	GATC	4 cut(s)	48, 129, 173, 287
MboI	GATC	4 cut(s)	46, 127, 171, 285
MboII	GAAGA	3 cut(s)	35, 38, 361
MhlI	GDGCHC	2 cut(s)	244, 258
MnlI	CCTC	6 cut(s)	99, 147, 194, 211, 245, 319
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	46, 127, 171, 285
NlaIII	CATG	3 cut(s)	211, 314, 412
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	5 cut(s)	4, 76, 83, 329, 382
PkrI	GCNGC	2 cut(s)	182, 270
Psp124BI	GAGCTC	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	273
PstNI	CAGNNNCTG	2 cut(s)	40, 277
PvuII	CAGCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	2 cut(s)	181, 269
Sau3AI	GATC	4 cut(s)	46, 127, 171, 285
ScaI	AGTACT	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	244, 258
SetI	ASST	3 cut(s)	98, 153, 258
SfcI	CTRYAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	123
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	99, 354
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	310
TaqI	TCGA	1 cut(s)	74
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	5 cut(s)	4, 76, 83, 329, 382
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	2 cut(s)	180, 268
TspDTI	ATGAA	2 cut(s)	224, 378
TspRI	CASTG	1 cut(s)	352
XspI	CTAG	2 cut(s)	99, 354
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.