Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

1861739 .. 1862464

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1025800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCGCCAGTTCTCAGTGAAATCCTCCGTTCCGGGTTTATGGTAGATTCCTCCCTCCGGCGCAGAACCCACCTCGTCCAATCTTTCTCCGTCGTCTTCCTCTACTGCGGAAATTCCTCTGGTTCCACTCAGCTTCAGAACTCTGGCTCCGAAGGGGATCTGCATCATCTGGTTGATCAAAGAAAGAGAAAACGGATGCAGTCGAACCGCGAATCGGCGCGGCGGTCCCGGATGCGGAAGCAGCAGCACCTGGACGATCTGACGGCGCAGGTCGCCCAGCTGCGGAAGGAGAACAATCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAATGTCGAGTCGGAAAACTCGGTCTTGAAAGCGCAGATGGCGGAGCTCAGCCAGAGACTGGAGTCGCTCAACGAGATCCTCGGTTACATCAACGCCGGCGACGGTTACGGCGGAGACTTTGAAACCACCCCGATTGCCGATCACAACAGCTTCATAAACCCTTGGAACATGCTTTATGTTAACCAACCAATCATGGCCACTGCCGACATGCTTCACCAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

7.07

Isoelectric Point (pI)

64.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	59 - 105	1.2e-07	Basic region leucine zipper
bZIP_1	PF00170	61 - 119	3.7e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccII	CGCG	2 cut(s)	210, 220
AciI	CCGC	8 cut(s)	108, 208, 220, 223, 235, 283, 380, 450
AclWI	GGATC	2 cut(s)	165, 409
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	5 cut(s)	57, 214, 234, 282, 397
AgsI	TTSAA	2 cut(s)	367, 461
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	133, 280, 385, 489
AluI	AGCT	4 cut(s)	133, 280, 385, 489
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	388, 447
AlwI	GGATC	2 cut(s)	165, 409
AlwNI	CAGNNNCTG	2 cut(s)	250, 397
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	241, 244, 280
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	4 cut(s)	63, 220, 268, 373
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	2 cut(s)	34, 229
AsuHPI	GGTGA	2 cut(s)	313, 545
AvaII	GGWCC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	253, 256, 267
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	2 cut(s)	279, 463
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	34, 229
BcoDI	GTCTC	2 cut(s)	388, 447
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	221, 242, 245, 281
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	4 cut(s)	222, 243, 246, 282
Bme1390I	CCNGG	3 cut(s)	34, 229, 251
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	124, 148, 227
BmrFI	CCNGG	3 cut(s)	34, 229, 251
BmsI	GCATC	3 cut(s)	172, 186, 222
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	34, 229
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	418, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 214, 234, 282, 397
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	8, 402
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	418, 500
BseGI	GGATG	2 cut(s)	201, 237
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	57, 214, 234, 282, 397
BseMII	CTCAG	3 cut(s)	28, 143, 400
BseNI	ACTGG	2 cut(s)	8, 402
BseXI	GCAGC	3 cut(s)	253, 256, 267
BseYI	CCCAGC	2 cut(s)	276, 327
Bsh1236I	CGCG	2 cut(s)	210, 220
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	4 cut(s)	33, 58, 229, 435
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	5 cut(s)	57, 214, 234, 282, 397
BsmAI	GTCTC	2 cut(s)	388, 447
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	157, 175, 256, 414, 478
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	8 cut(s)	108, 208, 220, 223, 235, 283, 380, 450
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	3 cut(s)	27, 142, 399
BspFNI	CGCG	2 cut(s)	210, 220
BspLI	GGNNCC	3 cut(s)	124, 148, 227
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	165, 409
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	8, 402
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	418, 500
BssMI	GATC	5 cut(s)	157, 175, 256, 414, 478
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	3 cut(s)	14, 129, 386
BstF5I	GGATG	2 cut(s)	201, 237
BstFNI	CGCG	2 cut(s)	210, 220
BstHHI	GCGC	4 cut(s)	63, 220, 268, 373
BstKTI	GATC	5 cut(s)	160, 178, 259, 417, 481
BstMAI	GTCTC	2 cut(s)	388, 447
BstMBI	GATC	5 cut(s)	157, 175, 256, 414, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 272, 377
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	511, 550
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	3 cut(s)	32, 227, 249
BstUI	CGCG	2 cut(s)	210, 220
BstV1I	GCAGC	3 cut(s)	253, 256, 267
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	157, 414
BstYI	RGATCY	2 cut(s)	157, 414
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	201, 237
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	22, 537
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	2 cut(s)	250, 397
CfoI	GCGC	4 cut(s)	63, 220, 268, 373
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	337, 508, 532, 547
CviJI	RGCY	7 cut(s)	133, 147, 280, 385, 390, 489, 536
CviKI_1	RGCY	7 cut(s)	133, 147, 280, 385, 390, 489, 536
DdeI	CTNAG	3 cut(s)	14, 129, 386
DpnI	GATC	5 cut(s)	159, 177, 258, 416, 480
DpnII	GATC	5 cut(s)	157, 175, 256, 414, 478
EaeI	YGGCCR	1 cut(s)	534
EciI	GGCGGA	2 cut(s)	395, 465
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	4 cut(s)	340, 511, 535, 550
FaiI	YATR	8 cut(s)	41, 314, 338, 494, 509, 516, 533, 548
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	336, 507, 531, 546
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	221, 242, 245, 281
FokI	GGATG	2 cut(s)	208, 244
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	221, 242, 245, 281
GlaI	GCGC	4 cut(s)	62, 219, 267, 372
GluI	GCNGC	4 cut(s)	221, 242, 245, 281
GsaI	CCCAGC	2 cut(s)	280, 331
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	4 cut(s)	33, 58, 229, 435
HhaI	GCGC	4 cut(s)	63, 220, 268, 373
Hin1II	CATG	4 cut(s)	340, 511, 535, 550
Hin6I	GCGC	4 cut(s)	61, 218, 266, 371
HinP1I	GCGC	4 cut(s)	61, 218, 266, 371
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	4 cut(s)	47, 212, 347, 401
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	4 cut(s)	33, 58, 229, 435
HphI	GGTGA	2 cut(s)	313, 545
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	138, 151, 261, 352
Hpy188III	TCNNGA	2 cut(s)	304, 364
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	2 cut(s)	95, 443
HpyAV	CCTTC	2 cut(s)	146, 280
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	163, 199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 272, 377
HpyF3I	CTNAG	3 cut(s)	14, 129, 386
Hsp92II	CATG	4 cut(s)	340, 511, 535, 550
HspAI	GCGC	4 cut(s)	61, 218, 266, 371
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	157, 175, 256, 414, 478
LmnI	GCTCC	2 cut(s)	152, 382
Lsp1109I	GCAGC	3 cut(s)	253, 256, 267
LweI	GCATC	3 cut(s)	172, 186, 222
MaeIII	GTNAC	2 cut(s)	422, 443
MalI	GATC	5 cut(s)	159, 177, 258, 416, 480
MboI	GATC	5 cut(s)	157, 175, 256, 414, 478
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	2 cut(s)	157, 414
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	2 cut(s)	356, 410
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	35, 61, 65, 83, 110, 127, 428
Mox20I	TGGCCA	1 cut(s)	536
MreI	CGCCGGCG	1 cut(s)	434
MroNI	GCCGGC	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	4 cut(s)	33, 58, 229, 435
MspR9I	CCNGG	3 cut(s)	34, 229, 251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	210, 220
MwoI	GCNNNNNNNGC	3 cut(s)	241, 272, 377
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	2 cut(s)	34, 229
NdeII	GATC	5 cut(s)	157, 175, 256, 414, 478
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	4 cut(s)	340, 511, 535, 550
NlaIV	GGNNCC	3 cut(s)	124, 148, 227
NspI	RCATGY	2 cut(s)	511, 550
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	47, 212
PflMI	CCANNNNNTGG	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	222, 243, 246, 282
PleI	GAGTC	2 cut(s)	355, 409
PpsI	GAGTC	2 cut(s)	355, 409
PshAI	GACNNNNGTC	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	276, 327
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	124, 148, 227
PspPI	GGNCC	1 cut(s)	225
PstNI	CAGNNNCTG	2 cut(s)	250, 397
PsuI	RGATCY	2 cut(s)	157, 414
PvuII	CAGCTG	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	221, 242, 245, 281
Sau3AI	GATC	5 cut(s)	157, 175, 256, 414, 478
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	2 cut(s)	356, 410
ScrFI	CCNGG	3 cut(s)	34, 229, 251
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	75, 135, 252, 273, 282, 387, 491
SfaNI	GCATC	3 cut(s)	172, 186, 222
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	8 cut(s)	108, 208, 220, 223, 235, 283, 380, 450
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	32, 227, 249
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	203, 345
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	112
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	47, 212
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	22, 544
TseI	GCWGC	3 cut(s)	241, 244, 280
TspDTI	ATGAA	2 cut(s)	353, 481
TspGWI	ACGGA	3 cut(s)	17, 79, 208
TspRI	CASTG	2 cut(s)	22, 544
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	2 cut(s)	511, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.