Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Forward (+)

21412857 .. 21413588

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1253800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTCCCGTACTCAGTGAAATCCTGCTCTCTGGGTGTATGATAAACCCCACCCTCCTTCGCAGAAGCCACTTAGTTCAATCCTTCTCTGTTGTCTTCCTCTACTGTGGGGTTTCTTCAGAGTCGAGCAAGCTCCAAAACTCAGGATCTGATGCAGATCTTAACCTAGTCATGGACCAGAGAAAGCGCAAAAGAATGCTGTCCAATAGGGAATCGGCACGTCGATCCCGGATGCGAAAACAAGAGCATATGACTGATCTAACGGCTCAGATTGGGCTGCTGATGAAGGAGAACAACCGGATCATCACATCCATGAATGTGACCAACCAGCTTTACATGAAGATTGAGGCAGAAAACTCAGTCCTCAGAGCTCAGATGGATGAGCTTACTAACAGATTGCAGTCCCTCAATGATATCTTGGATTGTATTAATTCAAGCAAATGGATTTATGAGGAAGAAGAAAATCATAATATTATTGGTGGAGGTGAAGGATTTCTGAATCCATGGAGTGCTGGCTTTTTGAATAATCAACCAATCATGGCCTCTGCTGACATGTTTATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

6.31

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	59 - 101	4e-07	Basic region leucine zipper
bZIP_1	PF00170	61 - 116	4.6e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	154, 219, 308
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	80, 435, 523
AjiI	CACGTC	1 cut(s)	221
AluBI	AGCT	4 cut(s)	133, 331, 371, 385
AluI	AGCT	4 cut(s)	133, 331, 371, 385
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	154, 219, 308
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	142, 222
BpiI	GAAGAC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	3 cut(s)	237, 308, 385
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	6 cut(s)	28, 156, 281, 372, 379, 386
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	229, 298
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	5 cut(s)	146, 157, 224, 256, 300
Bsp19I	CCATGG	1 cut(s)	503
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	6 cut(s)	27, 155, 280, 371, 378, 385
BspPI	GGATC	3 cut(s)	154, 219, 308
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	5 cut(s)	146, 157, 224, 256, 300
BssT1I	CCWWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	131, 514
BstDEI	CTNAG	7 cut(s)	14, 73, 142, 267, 358, 365, 372
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	237, 308, 385
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	149, 160, 227, 259, 303
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	146, 157, 224, 256, 300
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	146, 157
BstYI	RGATCY	2 cut(s)	146, 157
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	503
BtrI	CACGTC	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	237, 308, 385
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	131, 514
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	6 cut(s)	172, 313, 337, 504, 538, 553
CviJI	RGCY	9 cut(s)	69, 133, 266, 277, 331, 371, 385, 516, 542
CviKI_1	RGCY	9 cut(s)	69, 133, 266, 277, 331, 371, 385, 516, 542
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	7 cut(s)	14, 73, 142, 267, 358, 365, 372
DpnI	GATC	5 cut(s)	148, 159, 226, 258, 302
DpnII	GATC	5 cut(s)	146, 157, 224, 256, 300
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	6 cut(s)	175, 316, 340, 507, 541, 556
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	6 cut(s)	171, 312, 336, 503, 537, 552
FauNDI	CATATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	3 cut(s)	244, 295, 392
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	2 cut(s)	229, 298
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	175, 316, 340, 507, 541, 556
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	122, 212, 499
HpaII	CCGG	2 cut(s)	229, 298
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	6 cut(s)	121, 151, 270, 368, 375, 498
Hpy188III	TCNNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	4 cut(s)	68, 94, 280, 482
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	155, 400
HpyF3I	CTNAG	7 cut(s)	14, 73, 142, 267, 358, 365, 372
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	6 cut(s)	175, 316, 340, 507, 541, 556
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	146, 157, 224, 256, 300
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	8 cut(s)	18, 38, 129, 191, 242, 311, 341, 498
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	2 cut(s)	142, 222
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	5 cut(s)	148, 159, 226, 258, 302
MboI	GATC	5 cut(s)	146, 157, 224, 256, 300
MboII	GAAGA	5 cut(s)	88, 108, 352, 467, 470
MflI	RGATCY	2 cut(s)	146, 157
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	8 cut(s)	65, 110, 340, 374, 416, 445, 476, 553
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	2 cut(s)	162, 429
MslI	CAYNNNNRTG	3 cut(s)	311, 317, 557
MspI	CCGG	2 cut(s)	229, 298
MspR9I	CCNGG	1 cut(s)	229
Mva1269I	GAATGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	5 cut(s)	146, 157, 224, 256, 300
NlaIII	CATG	6 cut(s)	175, 316, 340, 507, 541, 556
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	556
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	212, 499
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	146, 157
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	3 cut(s)	311, 317, 557
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	162, 429
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	5 cut(s)	146, 157, 224, 256, 300
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	7 cut(s)	135, 168, 223, 333, 373, 387, 487
SfaNI	GCATC	2 cut(s)	142, 222
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	3 cut(s)	311, 317, 557
Sse9I	AATT	1 cut(s)	430
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	125, 223
TasI	AATT	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	212, 499
Tru1I	TTAA	2 cut(s)	162, 429
Tru9I	TTAA	2 cut(s)	162, 429
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	299, 329, 353
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	429
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.