pycom15g01880
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001596
Physical Location & Seq
Reverse (-)
1076037 .. 1076510
474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01880.1

Sequence Viewer

Length: 474 bp
ATGGCTTCTTCAAGCGGAAATTCCTCTGGTTCCGCTCAGCTTCAGAACTTTGCCTCTGAAGGGGATCTGCATCGTCCGGTGGATCAAAGAAAGAGAAAACGGATGCAATCGAACCGCGAATCGGCGCGGCGGTCGCGGATGCGGAAGCAGCAGCACCTGGACGATCTGATGGCGCAGGTCGCCCAGCTGCGGAAGGAGAACAACCAAATCCTGACCAGCATAAACATCACCACCCAGCACTTCATGAATGTCGAGTCGGAAAACTCGGTCTTGAAAGCGCAGATGGGGGAGCTCAGCCAGAGACTGGAGTCCCTCGACGAGATCCTCGGTTACATCAACGGCGGCGTCGGCCACGGCGGAGGCTTTGAAACCACCCCTGTTGCCGATCACAACAGTTTAATAAACCCTTGGAATATGCTTCATGTGAACCAGCCAATCATGGCCACTGCTGACATGCTTCACCAATACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

158

Amino Acids

17.68

Weight (kDa)

7.07

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 28 - 73 6.7e-08 Basic region leucine zipper
bZIP_1 PF00170 30 - 87 3.5e-10 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 3 cut(s) 117, 127, 136
AclWI GGATC 3 cut(s) 72, 90, 316
AcoI YGGCCR 2 cut(s) 349, 441
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 2 cut(s) 26, 78
AcyI GRCGYC 1 cut(s) 345
AfiI CCNNNNNNNGG 4 cut(s) 60, 121, 189, 304
AgsI TTSAA 3 cut(s) 12, 274, 368
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 40, 187, 292
AluI AGCT 3 cut(s) 40, 187, 292
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 3 cut(s) 72, 90, 316
AlwNI CAGNNNCTG 2 cut(s) 157, 304
AoxI GGCC 2 cut(s) 349, 441
ApeKI GCWGC 3 cut(s) 148, 151, 187
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 3 cut(s) 127, 175, 280
AsuHPI GGTGA 2 cut(s) 220, 452
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 160, 163, 174
BccI CCATC 2 cut(s) 163, 277
BceAI ACGGC 2 cut(s) 355, 370
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 5 cut(s) 128, 149, 152, 188, 343
BlpI GCTNAGC 2 cut(s) 36, 293
BlsI GCNGC 5 cut(s) 129, 150, 153, 189, 344
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 3 cut(s) 79, 93, 129
BoxI GACNNNNGTC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 326
Bpu1102I GCTNAGC 2 cut(s) 36, 293
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 325, 352, 407
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 121, 189, 304
Bse1I ACTGG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 325, 352, 407
BseGI GGATG 2 cut(s) 108, 144
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 60, 121, 189, 304
BseMII CTCAG 2 cut(s) 50, 307
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 160, 163, 174
BseYI CCCAGC 2 cut(s) 183, 234
Bsh1236I CGCG 3 cut(s) 117, 127, 136
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 351, 443
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 4 cut(s) 60, 121, 189, 304
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 2 cut(s) 351, 443
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 5 cut(s) 64, 82, 163, 321, 385
Bsp1720I GCTNAGC 2 cut(s) 36, 293
BspANI GGCC 2 cut(s) 351, 443
BspCNI CTCAG 2 cut(s) 49, 306
BspFNI CGCG 3 cut(s) 117, 127, 136
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 72, 90, 316
BsrBI CCGCTC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 325, 352, 407
BssMI GATC 5 cut(s) 64, 82, 163, 321, 385
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 36, 293
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 108, 144
BstFNI CGCG 3 cut(s) 117, 127, 136
BstHHI GCGC 3 cut(s) 127, 175, 280
BstKTI GATC 5 cut(s) 67, 85, 166, 324, 388
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 5 cut(s) 64, 82, 163, 321, 385
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 4 cut(s) 133, 148, 179, 348
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 457
BstPAI GACNNNNGTC 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 156
BstUI CGCG 3 cut(s) 117, 127, 136
BstV1I GCAGC 3 cut(s) 160, 163, 174
BstX2I RGATCY 2 cut(s) 64, 321
BstYI RGATCY 2 cut(s) 64, 321
BsuRI GGCC 2 cut(s) 351, 443
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 108, 144
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 166
CaiI CAGNNNCTG 2 cut(s) 157, 304
CciI TCATGA 1 cut(s) 243
CfoI GCGC 3 cut(s) 127, 175, 280
CseI GACGC 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 244, 422, 439, 454
CviJI RGCY 9 cut(s) 5, 40, 187, 292, 297, 351, 363, 433, 443
CviKI_1 RGCY 9 cut(s) 5, 40, 187, 292, 297, 351, 363, 433, 443
DdeI CTNAG 2 cut(s) 36, 293
DpnI GATC 5 cut(s) 66, 84, 165, 323, 387
DpnII GATC 5 cut(s) 64, 82, 163, 321, 385
EaeI YGGCCR 2 cut(s) 349, 441
EciI GGCGGA 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 26, 78
EcoICRI GAGCTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 4 cut(s) 247, 425, 442, 457
FaiI YATR 6 cut(s) 221, 245, 416, 423, 440, 455
FaqI GGGAC 1 cut(s) 295
FatI CATG 4 cut(s) 243, 421, 438, 453
Fnu4HI GCNGC 5 cut(s) 128, 149, 152, 188, 343
FokI GGATG 2 cut(s) 115, 151
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 5 cut(s) 128, 149, 152, 188, 343
GlaI GCGC 3 cut(s) 126, 174, 279
GluI GCNGC 5 cut(s) 128, 149, 152, 188, 343
GsaI CCCAGC 2 cut(s) 187, 238
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 351, 443
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 334
HhaI GCGC 3 cut(s) 127, 175, 280
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 4 cut(s) 247, 425, 442, 457
Hin6I GCGC 3 cut(s) 125, 173, 278
HinP1I GCGC 3 cut(s) 125, 173, 278
HinfI GANTC 3 cut(s) 119, 254, 308
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 220, 452
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 45, 58, 168, 259
Hpy188III TCNNGA 3 cut(s) 211, 244, 271
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 2 cut(s) 320, 350
HpyAV CCTTC 2 cut(s) 53, 187
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4V TGCA 2 cut(s) 70, 106
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 148, 179, 348
HpyF3I CTNAG 2 cut(s) 36, 293
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 4 cut(s) 247, 425, 442, 457
HspAI GCGC 3 cut(s) 125, 173, 278
Kzo9I GATC 5 cut(s) 64, 82, 163, 321, 385
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 3 cut(s) 160, 163, 174
LweI GCATC 3 cut(s) 79, 93, 129
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 66, 84, 165, 323, 387
MbiI CCGCTC 1 cut(s) 35
MboI GATC 5 cut(s) 64, 82, 163, 321, 385
MflI RGATCY 2 cut(s) 64, 321
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 263, 317
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 5 cut(s) 34, 64, 323, 335, 353
Mox20I TGGCCA 1 cut(s) 443
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 398, 472
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 3 cut(s) 117, 127, 136
MwoI GCNNNNNNNGC 4 cut(s) 133, 148, 179, 348
NdeII GATC 5 cut(s) 64, 82, 163, 321, 385
NlaIII CATG 4 cut(s) 247, 425, 442, 457
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 1 cut(s) 457
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 5 cut(s) 129, 150, 153, 189, 344
PleI GAGTC 2 cut(s) 262, 316
PpsI GAGTC 2 cut(s) 262, 316
PshAI GACNNNNGTC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 2 cut(s) 183, 234
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 31
PstNI CAGNNNCTG 2 cut(s) 157, 304
PsuI RGATCY 2 cut(s) 64, 321
PvuII CAGCTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 398, 472
SatI GCNGC 5 cut(s) 128, 149, 152, 188, 343
Sau3AI GATC 5 cut(s) 64, 82, 163, 321, 385
SchI GAGTC 2 cut(s) 263, 317
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 294
SetI ASST 5 cut(s) 42, 159, 180, 189, 294
SfaNI GCATC 3 cut(s) 79, 93, 129
Sse9I AATT 1 cut(s) 19
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 395
TaqI TCGA 3 cut(s) 110, 252, 315
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 19
TauI GCSGC 2 cut(s) 130, 345
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 398, 472
Tru9I TTAA 2 cut(s) 398, 472
TscAI CASTG 1 cut(s) 451
TseI GCWGC 3 cut(s) 148, 151, 187
TspDTI ATGAA 3 cut(s) 232, 260, 410
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 304
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.