Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001596

Physical Location & Seq

Genomic Coordinates Reverse (-)

16408750 .. 16409223

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTCTTCAAGTGGGGTTTCTTCAGAGTCAAGCAAGCTCCAAAACTCAGGATCTGATGTAGATCTTAACCTAGTCATGGACCAGAGAAAGCGCAAAAGAATGCTGTCCAATAGGGAATCAGCACGTCGATCCCGGATGCGAAAACAAGAGCATATGACTGATCTAACGGCTCAGATTGGGCTGCTGATGAAGGAGAACAACCAGATCATCACATCCATGAATGTGACCAACCAGCTTTACATGAAGATTGAGGCCGAAAACTCAGTCCTAAGAGCTCAGATGGATGAGCTTACCAACAGATTGCAGTCCCTCAATGATATCCTGGATTGTATTAATTCAAGCAAATGGATTTATGAGGAAGAAGAAAATCATAATATTATTGGTGGAAGTGATGGATTTCTGAATCCATGGAGTGCTGGCTTTTTGAATAATCAACCAATCATGGCCTCTGCTGACATGTTTATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

5.42

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	28 - 70	1.9e-07	Basic region leucine zipper
bZIP_1	PF00170	30 - 74	8.1e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75390 AT1G75390
fragaria_vesca	FvH4_1g12620 FvH4_2g09540 FvH4_2g39350
malus_domestica	MD02G1140600.v1.1 MD05G1062200.v1.1 MD08G1025800.v1.1 MD10G1069900.v1.1 MD15G1022500.v1.1 MD15G1253800.v1.1
prunus_persica	Prupe.1G374400_v2.0.a1 Prupe.7G160600_v2.0.a1 Prupe.8G091600_v2.0.a1
pyrus_communis	pycom02g11070 pycom05g05360 pycom08g01980 pycom10g05550 pycom15g01880 pycom15g22300
rosa_chinensis	RchiOBHm_Chr2g0100571 RchiOBHm_Chr6g0265831 RchiOBHm_Chr6g0301661
rosa_laevigata	RLG00000011235 RLG00000014155 RLG00000016986
rosa_multiflora	Rmu_co8174844.1_g000001 Rmu_sc0000468.1_g000014 Rmu_sc0000528.1_g000006 Rmu_sc0000528.1_g000007 Rmu_sc0023062.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166560 Rroxscaffold_7G00202340
rosa_rugosa	Rorug02G0089600 Rorug06G0020000 Rorug06G0307700
rosa_samantha	Rh2AG138700 Rh2BG142100 Rh2CG144400 Rh2DG143800 Rh6AG142200 Rh6AG420500 Rh6BG142100 Rh6BG426900 Rh6CG138700 Rh6CG433600 Rh6DG125900
rosa_wichuraiana	Rw2G010870 Rw6G012280 Rw6G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	61, 126
AcuI	CTGAAG	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	12, 342, 430
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	40, 238, 278, 292
AluI	AGCT	4 cut(s)	40, 238, 278, 292
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	61, 126
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	255, 447
ApeKI	GCWGC	1 cut(s)	184
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AseI	ATTAAT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	277, 389
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	136, 326
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	136, 326
BmsI	GCATC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	144, 215, 292
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	4 cut(s)	63, 188, 279, 293
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	257, 449
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	257, 449
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	53, 64, 131, 163, 207
Bsp19I	CCATGG	1 cut(s)	410
BspANI	GGCC	2 cut(s)	257, 449
BspCNI	CTCAG	4 cut(s)	62, 187, 278, 292
BspPI	GGATC	2 cut(s)	61, 126
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	53, 64, 131, 163, 207
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	38, 421
BstDEI	CTNAG	5 cut(s)	49, 174, 265, 272, 279
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	144, 215, 292
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	5 cut(s)	56, 67, 134, 166, 210
BstMBI	GATC	5 cut(s)	53, 64, 131, 163, 207
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	134, 324
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	53, 64
BstYI	RGATCY	2 cut(s)	53, 64
BsuRI	GGCC	2 cut(s)	257, 449
BtgI	CCRYGG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	144, 215, 292
Cac8I	GCNNGC	2 cut(s)	38, 421
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	6 cut(s)	79, 220, 244, 411, 445, 460
DdeI	CTNAG	5 cut(s)	49, 174, 265, 272, 279
DpnI	GATC	5 cut(s)	55, 66, 133, 165, 209
DpnII	GATC	5 cut(s)	53, 64, 131, 163, 207
Ecl136II	GAGCTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	280
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	6 cut(s)	82, 223, 247, 414, 448, 463
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	6 cut(s)	78, 219, 243, 410, 444, 459
FauNDI	CATATG	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	151, 202, 299
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	257, 449
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	6 cut(s)	82, 223, 247, 414, 448, 463
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	29, 119, 406
HpaII	CCGG	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	28, 58, 177, 282, 405
Hpy188III	TCNNGA	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	307
HpyF3I	CTNAG	5 cut(s)	49, 174, 265, 272, 279
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	6 cut(s)	82, 223, 247, 414, 448, 463
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	53, 64, 131, 163, 207
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	8 cut(s)	36, 98, 149, 218, 248, 311, 338, 405
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	5 cut(s)	55, 66, 133, 165, 209
MboI	GATC	5 cut(s)	53, 64, 131, 163, 207
MboII	GAAGA	4 cut(s)	15, 259, 374, 377
MflI	RGATCY	2 cut(s)	53, 64
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	247, 323, 352, 460
MseI	TTAA	2 cut(s)	69, 336
MslI	CAYNNNNRTG	3 cut(s)	218, 224, 464
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	2 cut(s)	136, 326
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	326
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	410
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	5 cut(s)	53, 64, 131, 163, 207
NlaIII	CATG	6 cut(s)	82, 223, 247, 414, 448, 463
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	463
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	119, 406
PfoI	TCCNGGA	2 cut(s)	134, 324
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	459
PshBI	ATTAAT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	53, 64
RseI	CAYNNNNRTG	3 cut(s)	218, 224, 464
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	69, 336
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	5 cut(s)	53, 64, 131, 163, 207
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	136, 326
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	6 cut(s)	42, 75, 130, 240, 280, 294
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	3 cut(s)	218, 224, 464
Sse9I	AATT	1 cut(s)	337
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	134, 324
StyI	CCWWGG	1 cut(s)	410
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	130
TasI	AATT	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	119, 406
Tru1I	TTAA	2 cut(s)	69, 336
Tru9I	TTAA	2 cut(s)	69, 336
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	206, 236, 260
VpaK11BI	GGWCC	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	336
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.