Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Forward (+)

10476551 .. 10486862

Gene Structure 10312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11956.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGACGGAAGAGTTGGCTTGGAGAATGCCTAGATTTCAAAAGACGACATCCTTTCCCTTGCTAAGAAGGATGATAAAAGTTCAGTTTAGTAATCACTATGGTTCTGGTTTCTTTTGGGTGATTTCCAATTCATCAGTTCTCAAGGTAACGGAGAGGGTCATCCCATTGCCAGTCCGCCATTGTCCCAAAATGACTACAATGAACGCCAAAGGCAGTAGAAAGATTTGGAGTCAATGGTCAGAAGACAAGAGGAACTTAATGGGTGAACTCAAGATAGCAGATTTTGGGTGGTCAGTGCATACATTCAATTGCAGGCGGACCATGTGTGGCACTCTTGATTACCTCCCTCCTGAGATGGGTTCGGTGAAGGTTGCTGGGACTCAATTCTGTATTGAAGCTGCGAGGGGAGCAGAGGCTGACATAAATGATGACATTGAAGACTATGAAGATGACTTGAAACAAATGAGCAATTTAACAAAGGAGGAATGTGTGCATGTACTTTTCCGACAAAGTACCGGGTACGTTTATTTGGGATTATTTGATGCTGAGAACGACGCAGAAGAGCCTTCCGGTAATAAAGCAGGAGGATGTCATTGTCTGGATTTGAGCTGTAAATTCAAACCGGAAGAAAGAAGAACCCAGCATTTGGGACTATTCAAAATCACACATCGAATTGTTGCAATGGAACAGCAACAACAACAACAATCTTCCTCTATGCAATTCGACTCCAAGGAACAATCAGAGTATTTCGGCCCAAAGATTCAGGCTTGGTTTTATAGCGACATGAGTCTCTACATGAAGAGGAAGAGCAATCACATAGTGGCACTCAAAGTCCTCTTCAAGAGCCAGTTGCAACAATCTCAGGTTGAGCATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCTTCTTCGCCATCCCAGTATTCTACATCTTTATGGCTACTTTTATGATCAGTATGTTGCATCATTGGCCGGAGCCCTTGTATACTATACTGTCATGGAAAGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000922 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009504 GO:0009524 GO:0009987 GO:0010564 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

338

Amino Acids

39.09

Weight (kDa)

7.15

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	263 - 323	4.8e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	987
AciI	CCGC	2 cut(s)	178, 319
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	1 cut(s)	617
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	3 cut(s)	501, 517, 524
AfiI	CCNNNNNNNGG	2 cut(s)	359, 649
AgsI	TTSAA	9 cut(s)	41, 310, 398, 440, 460, 622, 661, 844, 896
AluBI	AGCT	3 cut(s)	401, 612, 880
AluI	AGCT	3 cut(s)	401, 612, 880
Alw26I	GTCTC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	754, 972
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	617
AspS9I	GGNCC	2 cut(s)	321, 755
AsuC2I	CCSGG	2 cut(s)	520, 887
AsuHPI	GGTGA	3 cut(s)	133, 278, 379
AvaII	GGWCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	882, 914
BbsI	GAAGAC	3 cut(s)	252, 447, 899
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	352, 924
BcgI	CGANNNNNNTGC	2 cut(s)	863, 897
BclI	TGATCA	1 cut(s)	952
BcnI	CCSGG	2 cut(s)	520, 887
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	520, 887
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	321, 755
BmiI	GGNNCC	1 cut(s)	979
BmrFI	CCNGG	2 cut(s)	520, 887
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	3 cut(s)	535, 883, 974
BmuI	ACTGGG	1 cut(s)	915
BoxI	GACNNNNGTC	1 cut(s)	789
BpiI	GAAGAC	3 cut(s)	252, 447, 899
BpuEI	CTTGAG	2 cut(s)	128, 257
BpuMI	CCSGG	2 cut(s)	520, 887
BsaAI	YACGTR	1 cut(s)	1011
BsaJI	CCNNGG	1 cut(s)	732
BsaWI	WCCGGW	2 cut(s)	572, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 649
Bse1I	ACTGG	3 cut(s)	173, 850, 921
Bse3DI	GCAATG	2 cut(s)	167, 690
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	5 cut(s)	50, 78, 162, 596, 916
BseLI	CCNNNNNNNGG	2 cut(s)	359, 649
BseMI	GCAATG	2 cut(s)	167, 690
BseMII	CTCAG	3 cut(s)	345, 540, 878
BseNI	ACTGG	3 cut(s)	173, 850, 921
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	2 cut(s)	377, 642
BshFI	GGCC	2 cut(s)	756, 974
BsiSI	CCGG	5 cut(s)	519, 573, 626, 886, 975
BslFI	GGGAC	3 cut(s)	171, 394, 666
BslI	CCNNNNNNNGG	2 cut(s)	359, 649
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	3 cut(s)	171, 394, 666
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	756, 974
Bsp1286I	GDGCHC	1 cut(s)	982
Bsp143I	GATC	1 cut(s)	952
BspACI	CCGC	2 cut(s)	178, 319
BspANI	GGCC	2 cut(s)	756, 974
BspCNI	CTCAG	3 cut(s)	346, 541, 877
BspLI	GGNNCC	1 cut(s)	979
BspQI	GCTCTTC	2 cut(s)	558, 803
BsrDI	GCAATG	2 cut(s)	167, 690
BsrI	ACTGG	3 cut(s)	173, 850, 921
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	1 cut(s)	952
BssNAI	GTATAC	1 cut(s)	988
BssT1I	CCWWGG	1 cut(s)	732
Bst1107I	GTATAC	1 cut(s)	988
Bst4CI	ACNGT	1 cut(s)	997
Bst6I	CTCTTC	5 cut(s)	6, 558, 797, 803, 845
BstBAI	YACGTR	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	65, 354, 549, 864
BstF5I	GGATG	5 cut(s)	50, 78, 162, 596, 916
BstKTI	GATC	1 cut(s)	955
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	1 cut(s)	952
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 971
BstNSI	RCATGY	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	518, 885
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	3 cut(s)	252, 447, 899
BstZ17I	GTATAC	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	756, 974
BtsCI	GGATG	5 cut(s)	50, 78, 162, 596, 916
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	321, 755
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	3 cut(s)	500, 516, 523
CviAII	CATG	5 cut(s)	325, 497, 787, 799, 1000
CviQI	GTAC	3 cut(s)	500, 516, 523
DdeI	CTNAG	4 cut(s)	65, 354, 549, 864
DpnI	GATC	1 cut(s)	954
DpnII	GATC	1 cut(s)	952
DraIII	CACNNNGTG	1 cut(s)	823
EaeI	YGGCCR	1 cut(s)	972
Eam1104I	CTCTTC	5 cut(s)	6, 558, 797, 803, 845
EarI	CTCTTC	5 cut(s)	6, 558, 797, 803, 845
EciI	GGCGGA	2 cut(s)	167, 334
Eco130I	CCWWGG	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	5 cut(s)	328, 500, 790, 802, 1003
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	3 cut(s)	171, 394, 666
FatI	CATG	5 cut(s)	324, 496, 786, 798, 999
FbaI	TGATCA	1 cut(s)	952
FblI	GTMKAC	1 cut(s)	987
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	5 cut(s)	37, 85, 149, 603, 903
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	2 cut(s)	381, 646
HaeIII	GGCC	2 cut(s)	756, 974
HapII	CCGG	5 cut(s)	519, 573, 626, 886, 975
HgaI	GACGC	1 cut(s)	566
Hin1II	CATG	5 cut(s)	328, 500, 790, 802, 1003
HinfI	GANTC	5 cut(s)	232, 382, 728, 763, 790
HpaII	CCGG	5 cut(s)	519, 573, 626, 886, 975
HphI	GGTGA	3 cut(s)	133, 278, 379
Hpy166II	GTNNAC	2 cut(s)	269, 988
Hpy188I	TCNGA	3 cut(s)	244, 509, 745
Hpy188III	TCNNGA	5 cut(s)	274, 338, 353, 602, 844
Hpy8I	GTNNAC	2 cut(s)	269, 988
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	3 cut(s)	63, 364, 579
HpyCH4III	ACNGT	1 cut(s)	997
HpyCH4IV	ACGT	2 cut(s)	525, 1010
HpyCH4V	TGCA	7 cut(s)	301, 315, 496, 683, 721, 856, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 971
HpyF3I	CTNAG	4 cut(s)	65, 354, 549, 864
HpySE526I	ACGT	2 cut(s)	525, 1010
Hsp92II	CATG	5 cut(s)	328, 500, 790, 802, 1003
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	1 cut(s)	952
LguI	GCTCTTC	2 cut(s)	558, 803
LmnI	GCTCC	2 cut(s)	410, 977
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	3 cut(s)	535, 883, 974
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	525, 1010
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	954
MboI	GATC	1 cut(s)	952
MfeI	CAATTG	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	982
MluCI	AATT	7 cut(s)	130, 310, 386, 472, 617, 675, 722
MlyI	GAGTC	4 cut(s)	241, 376, 722, 799
MmeI	TCCRAC	1 cut(s)	532
MseI	TTAA	2 cut(s)	260, 476
MslI	CAYNNNNRTG	1 cut(s)	936
MspI	CCGG	5 cut(s)	519, 573, 626, 886, 975
MspR9I	CCNGG	2 cut(s)	520, 887
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	410, 971
NciI	CCSGG	2 cut(s)	520, 887
NdeII	GATC	1 cut(s)	952
NlaIII	CATG	5 cut(s)	328, 500, 790, 802, 1003
NlaIV	GGNNCC	1 cut(s)	979
NspI	RCATGY	1 cut(s)	500
PciSI	GCTCTTC	2 cut(s)	558, 803
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	763
PflMI	CCANNNNNTGG	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	4 cut(s)	240, 376, 722, 798
PpsI	GAGTC	4 cut(s)	240, 376, 722, 798
Ppu21I	YACGTR	1 cut(s)	1011
PshAI	GACNNNNGTC	1 cut(s)	789
PspFI	CCCAGC	2 cut(s)	377, 642
PspN4I	GGNNCC	1 cut(s)	979
PspPI	GGNCC	2 cut(s)	321, 755
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	501, 517, 524
RsaNI	GTAC	3 cut(s)	500, 516, 523
RseI	CAYNNNNRTG	1 cut(s)	936
SapI	GCTCTTC	2 cut(s)	558, 803
SaqAI	TTAA	2 cut(s)	260, 476
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	952
Sau96I	GGNCC	2 cut(s)	321, 755
SchI	GAGTC	4 cut(s)	241, 376, 722, 799
ScrFI	CCNGG	2 cut(s)	520, 887
SduI	GDGCHC	1 cut(s)	982
SetI	ASST	9 cut(s)	150, 348, 375, 403, 528, 614, 870, 882, 1013
SfaNI	GCATC	3 cut(s)	535, 883, 974
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	2 cut(s)	143, 272
SmoI	CTYRAG	2 cut(s)	143, 272
Sse9I	AATT	7 cut(s)	130, 310, 386, 472, 617, 675, 722
SsiI	CCGC	2 cut(s)	178, 319
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	518, 885
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	997
TaiI	ACGT	2 cut(s)	528, 1013
TaqI	TCGA	2 cut(s)	673, 726
TasI	AATT	7 cut(s)	130, 310, 386, 472, 617, 675, 722
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	763
Tru1I	TTAA	2 cut(s)	260, 476
Tru9I	TTAA	2 cut(s)	260, 476
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	123, 218, 462, 815
TspGWI	ACGGA	2 cut(s)	23, 167
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	987
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.