Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Forward (+)

19518390 .. 19519503

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCTAGAATCAAGAATGGTAGATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCAGAACATATGCAGAAGAACCTTGAATCATCCTCTGATTTAAAAGCTGCTGATGAAACTAAGACTGACTTGAAGATCACTCCTGAGTTGAAGGAAGAAACAATTCCCAGGGAGGCTAAAGATGAAAACAGTGCAAGACAAGCCACTACGATTTCTGCTGATAAAGTAGAGGACAAATGCATGAAAGATGATGGAAGTGAACTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

90

Amino Acids

10.01

Weight (kDa)

4.7

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	86, 133, 151
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	167, 168
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	167, 168
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	23, 135
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	167, 168
BssMI	GATC	2 cut(s)	23, 135
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	34, 191
BstDEI	CTNAG	2 cut(s)	120, 144
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	26, 138
BstMBI	GATC	2 cut(s)	23, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	196
CviAII	CATG	2 cut(s)	43, 241
CviJI	RGCY	3 cut(s)	107, 176, 203
CviKI_1	RGCY	3 cut(s)	107, 176, 203
DdeI	CTNAG	2 cut(s)	120, 144
DpnI	GATC	2 cut(s)	25, 137
DpnII	GATC	2 cut(s)	23, 135
DraI	TTTAAA	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	242
FaeI	CATG	2 cut(s)	46, 244
FaiI	YATR	5 cut(s)	44, 69, 71, 242, 268
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	2 cut(s)	42, 240
FauNDI	CATATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	46, 244
HinfI	GANTC	2 cut(s)	9, 86
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	13, 143
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	34, 191
HpyCH4V	TGCA	3 cut(s)	73, 194, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	120, 144
Hsp92II	CATG	2 cut(s)	46, 244
Kzo9I	GATC	2 cut(s)	23, 135
LpnPI	CCDG	3 cut(s)	154, 156, 181
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	25, 137
MboI	GATC	2 cut(s)	23, 135
MboII	GAAGA	3 cut(s)	88, 145, 167
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	3 cut(s)	103, 166, 223
Mph1103I	ATGCAT	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	2 cut(s)	23, 135
NlaIII	CATG	2 cut(s)	46, 244
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	1 cut(s)	46
PasI	CCCWGGG	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	9, 86
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	23, 135
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	2 cut(s)	84, 109
Sse9I	AATT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	34, 191
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	9, 86
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	129, 198, 257
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.