Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_17

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

4687 .. 9564

Gene Structure 4878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c17g00020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTCCTATGCATTTCAAGAAGGGGGATCTTCTAAGTGATTCCAAAAACCACCAGACAGCTAAAAAGATATCAAGTATGGTCAGAAACCCATCAGGGCTTAGGGGGAAAGGTCACTTGCACTCTTCACATAATAAACAGTATACTATGAAAAGAGAAGAGAACGTGAAAAATGCAACTGGCACATCCATGTTAGCTCAGGAGAATCACGGCAGAAGTTGGATGCCGGAAGATCTAGCTAGGTTGCTTTTAACTCTTAATCCCAAACCCCAAACATTGCTCCACAAGTCAAAACTGGGTCATACCAGTGCCACACATTTTTCAACTGCTATTAAAACTCAAAAAGAGGACAGGACGATTTATGTTCGGGGACCTGCAGCACCATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGCCGCTGCCGCATGCTAATGGTTCTCTTTCACATAGTGAAGAGAGTACTGCTGAGCTGGAAGAAGAGATGATGGCCAAAATTCCAAAGTTTAAGGCTCGTCCAGTAAACAAAAAGGTTCAGTTTAGTAATCACTATGGTCTACTGTTGATGCTTGGTTCTGGTTTCTTTTGGGTGATTTCCAATTCATCAGTTCTCAAGGTAATGGAGAGGGTCATCCCATTTCCAGTTAGCCATTGTCCCAAAATAACTACAATGAACGCCAGAGGCAGTAGAAAGATTTGGAGGAGGAACTTAATTGCAGGTTGTGGTCAAGGTTGCTGTGATTTTGTTGATCAGATGGTGAGAGTGAGTCCTACATTGTATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

10.01

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	382, 728
AccI	GTMKAC	2 cut(s)	143, 577
AciI	CCGC	2 cut(s)	440, 446
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	516
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	427, 484
AgsI	TTSAA	3 cut(s)	19, 324, 393
AluBI	AGCT	4 cut(s)	62, 197, 239, 493
AluI	AGCT	4 cut(s)	62, 197, 239, 493
Alw26I	GTCTC	2 cut(s)	9, 426
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	2 cut(s)	377, 442
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	622, 790
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	389, 429
BccI	CCATC	3 cut(s)	100, 502, 769
BceAI	ACGGC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	9, 426
BfaI	CTAG	2 cut(s)	236, 240
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	2 cut(s)	382, 728
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	4 cut(s)	378, 440, 443, 446
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	379, 441, 444, 447
BmcAI	AGTACT	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	372, 416
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	213, 576
BmuI	ACTGGG	1 cut(s)	305
Bpu10I	CCTNAGC	2 cut(s)	101, 198
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	617
Bse1I	ACTGG	5 cut(s)	184, 300, 306, 539, 662
Bse3DI	GCAATG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	185, 228, 651
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	212, 480
BseNI	ACTGG	5 cut(s)	184, 300, 306, 539, 662
BseRI	GAGGAG	1 cut(s)	736
BseXI	GCAGC	2 cut(s)	389, 429
BshFI	GGCC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	384, 660
BsmAI	GTCTC	2 cut(s)	9, 426
BsmFI	GGGAC	2 cut(s)	384, 660
BsnI	GGCC	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	28, 232, 769
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	2 cut(s)	440, 446
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	2 cut(s)	211, 481
BspLI	GGNNCC	2 cut(s)	372, 416
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	2 cut(s)	382, 728
BspPI	GGATC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	5 cut(s)	184, 300, 306, 539, 662
BssMI	GATC	3 cut(s)	28, 232, 769
BssNAI	GTATAC	1 cut(s)	144
Bst1107I	GTATAC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	141, 582
Bst6I	CTCTTC	4 cut(s)	130, 153, 471, 495
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	4 cut(s)	35, 101, 198, 489
BstF5I	GGATG	3 cut(s)	185, 228, 651
BstKTI	GATC	3 cut(s)	31, 235, 772
BstMAI	GTCTC	2 cut(s)	9, 426
BstMBI	GATC	3 cut(s)	28, 232, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	389, 429
BstX2I	RGATCY	2 cut(s)	28, 232
BstYI	RGATCY	2 cut(s)	28, 232
BstZ17I	GTATAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	185, 228, 651
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	382, 728
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	426, 483
CviAII	CATG	2 cut(s)	190, 449
CviJI	RGCY	8 cut(s)	62, 100, 197, 239, 493, 512, 533, 669
CviKI_1	RGCY	8 cut(s)	62, 100, 197, 239, 493, 512, 533, 669
CviQI	GTAC	2 cut(s)	426, 483
DdeI	CTNAG	4 cut(s)	35, 101, 198, 489
DpnI	GATC	3 cut(s)	30, 234, 771
DpnII	GATC	3 cut(s)	28, 232, 769
DraIII	CACNNNGTG	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	4 cut(s)	130, 153, 471, 495
EarI	CTCTTC	4 cut(s)	130, 153, 471, 495
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	2 cut(s)	193, 452
FaqI	GGGAC	2 cut(s)	384, 660
FatI	CATG	2 cut(s)	189, 448
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	2 cut(s)	143, 577
Fnu4HI	GCNGC	4 cut(s)	378, 440, 443, 446
FokI	GGATG	3 cut(s)	172, 235, 638
Fsp4HI	GCNGC	4 cut(s)	378, 440, 443, 446
FspBI	CTAG	2 cut(s)	236, 240
GluI	GCNGC	4 cut(s)	378, 440, 443, 446
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	193, 452
HinfI	GANTC	3 cut(s)	41, 205, 787
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	622, 790
Hpy166II	GTNNAC	3 cut(s)	144, 544, 578
Hpy188I	TCNGA	2 cut(s)	86, 774
Hpy188III	TCNNGA	2 cut(s)	19, 200
Hpy8I	GTNNAC	3 cut(s)	144, 544, 578
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	141, 582
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	13, 121, 176, 377, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	4 cut(s)	35, 101, 198, 489
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	193, 452
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	28, 232, 769
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	2 cut(s)	389, 429
LweI	GCATC	2 cut(s)	213, 576
MaeI	CTAG	2 cut(s)	236, 240
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	30, 234, 771
MboI	GATC	3 cut(s)	28, 232, 769
MboII	GAAGA	7 cut(s)	23, 117, 170, 242, 488, 509, 512
MflI	RGATCY	2 cut(s)	28, 232
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	3 cut(s)	516, 619, 732
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	340, 639, 695, 714, 717
Mox20I	TGGCCA	1 cut(s)	512
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	5 cut(s)	251, 258, 333, 528, 731
MslI	CAYNNNNRTG	3 cut(s)	188, 306, 453
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	3 cut(s)	28, 232, 769
NlaIII	CATG	2 cut(s)	193, 452
NlaIV	GGNNCC	2 cut(s)	372, 416
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	41, 205
PkrI	GCNGC	4 cut(s)	379, 441, 444, 447
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	372, 416
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	28, 232
RsaI	GTAC	2 cut(s)	427, 484
RsaNI	GTAC	2 cut(s)	426, 483
RseI	CAYNNNNRTG	3 cut(s)	188, 306, 453
SaqAI	TTAA	5 cut(s)	251, 258, 333, 528, 731
SatI	GCNGC	4 cut(s)	378, 440, 443, 446
Sau3AI	GATC	3 cut(s)	28, 232, 769
Sau96I	GGNCC	1 cut(s)	371
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	1 cut(s)	796
SfaNI	GCATC	2 cut(s)	213, 576
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	3 cut(s)	188, 306, 453
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	3 cut(s)	516, 619, 732
SsiI	CCGC	2 cut(s)	440, 446
SspMI	CTAG	2 cut(s)	236, 240
TaaI	ACNGT	2 cut(s)	141, 582
TaiI	ACGT	1 cut(s)	168
TasI	AATT	3 cut(s)	516, 619, 732
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	2 cut(s)	442, 448
TfiI	GAWTC	2 cut(s)	41, 205
Tru1I	TTAA	5 cut(s)	251, 258, 333, 528, 731
Tru9I	TTAA	5 cut(s)	251, 258, 333, 528, 731
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	377, 442
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	164, 422, 612, 707
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	143, 577
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	2 cut(s)	236, 240
ZrmI	AGTACT	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.