Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000750

Physical Location & Seq

Genomic Coordinates Reverse (-)

19736014 .. 19737712

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCCATCTCAACTAAGTTTCCTTTGGATTATACATTGTACTGGTATGAACTTAAAGCTTTCATGCCTCGAATCAAGACTGGTAGATCCTTTACAGTAGAGAGCATGTGCGACTTTACTGAAGCAGAACATATGCAGAAGAACCTTGAATCATCCTCTGATTTAAAAGCTGCTGATGAAACAAAGGCTGACTTGAAGATCACTCCTGAATTGAAGGAAGAAACAATTCCCAGGGTGGCTAAAGATGAAAACAGTGCAAGACAAGCCACTACGATTTCTGCTGATAAAGTAGAGGACAAATGCATGAAAGATGATGGAAGTGTTCTGGCTGCTGCAGTATCTTCCAATAAGAGAACTGATATAACTAATGAGAAGGAGAATAGTAATTCCATAGCTAGTACTCCAAAGCCACCCATGAATTATTCCAAGAAGGGAGATCTTTATTCCAAAAACCACCAGACAGCTAAAAAGATATCAAGTATGGTCAGAAACCCATCAGGGCCAAGGGGAAAAAGTCACTTGCACTTTTCACATATTAAACCGTATACTATGAAAAGAGAAGAGAACGTGAAAAATGCAACCGGCACATCCATGTTAGCTCAGGTGAATCAGGCAATTAAGCGGCAGAAGTTGGATGCTGGAAGATCTAGACAGATTCTTAACCCAAACATTGCTCCACAAGTCAAAACTAGGTTATACAGTGCCACACATTTTTCAACTGCTATTAAAACTCAAAAAGAGGACAGGACGGTTCGGGAACCTGCAGCACCATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGTCGCTGCCGCATGCTAATGGTTCTCTTTCACACATGAAGCCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

291

Amino Acids

32.55

Weight (kDa)

9.63

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03780 AT1G03780 AT1G03780
fragaria_vesca	FvH4_2g11956 FvH4_5g28370 FvH4_5g28401 FvH4_5g28402 FvH4_5g28440 FvH4_5g28450 FvH4_5g28450 FvH4_5g28471 FvH4_5g28480 FvH4_5g28561 FvH4_6g25610 FvH4_6g25610 FvH4_6g25690 FvH4_6g25731 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_6g26550 FvH4_c15g00040 FvH4_c17g00020 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090 FvH4_c17g00090
malus_domestica	MD09G1243900.v1.1 MD17G1235800.v1.1
prunus_persica	Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1 Prupe.3G140300_v2.0.a1
pyrus_communis	pycom17g23880
rosa_chinensis	RchiOBHm_Chr2g0127601
rosa_laevigata	RLG00000018552 RLG00000018951
rosa_multiflora	Rmu_ssc0000200.1_g000020
rosa_roxburghii	Rroxscaffold_2G00116560 Rroxscaffold_2G00123480
rosa_rugosa	Rorug02G0272600
rosa_samantha	Rh2AG324600 Rh2BG333900 Rh2CG312100 Rh2DG352100
rosa_wichuraiana	Rw2G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	2 cut(s)	622, 833
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	3 cut(s)	41, 400, 814
AgsI	TTSAA	5 cut(s)	149, 196, 214, 717, 780
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	59, 170, 395, 464, 599
AluI	AGCT	5 cut(s)	59, 170, 395, 464, 599
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	5 cut(s)	170, 329, 332, 764, 829
Asp700I	GAANNNNTTC	2 cut(s)	225, 800
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	616
BbvI	GCAGC	5 cut(s)	157, 316, 319, 776, 816
BccI	CCATC	3 cut(s)	14, 308, 502
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	3 cut(s)	396, 648, 690
BfmI	CTRYAG	2 cut(s)	333, 762
BfuAI	ACCTGC	1 cut(s)	769
BglII	AGATCT	2 cut(s)	436, 644
BisI	GCNGC	7 cut(s)	171, 330, 333, 623, 765, 830, 833
BlsI	GCNGC	7 cut(s)	172, 331, 334, 624, 766, 831, 834
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	759, 803
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	625
Bpu10I	CCTNAGC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	230, 231, 503
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	47, 85
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	230, 231, 503
BseGI	GGATG	3 cut(s)	152, 587, 640
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	47, 85
BseXI	GCAGC	5 cut(s)	157, 316, 319, 776, 816
BshFI	GGCC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	813
BsnI	GGCC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	86, 198, 436, 644
BspACI	CCGC	2 cut(s)	622, 833
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	759, 803
BspMAI	CTGCAG	2 cut(s)	337, 766
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	47, 85
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	230, 231, 503
BssMI	GATC	4 cut(s)	86, 198, 436, 644
BssNAI	GTATAC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	503
Bst1107I	GTATAC	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	5 cut(s)	97, 254, 543, 701, 751
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	2 cut(s)	15, 600
BstF5I	GGATG	3 cut(s)	152, 587, 640
BstKTI	GATC	4 cut(s)	89, 201, 439, 647
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	4 cut(s)	86, 198, 436, 644
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	109, 839
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	2 cut(s)	333, 762
BstV1I	GCAGC	5 cut(s)	157, 316, 319, 776, 816
BstX2I	RGATCY	3 cut(s)	86, 436, 644
BstYI	RGATCY	3 cut(s)	86, 436, 644
BstZ17I	GTATAC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	152, 587, 640
BtsIMutI	CAGTG	2 cut(s)	259, 706
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	837
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	40, 399, 813
CviAII	CATG	7 cut(s)	64, 106, 304, 415, 592, 836, 859
CviQI	GTAC	3 cut(s)	40, 399, 813
DdeI	CTNAG	2 cut(s)	15, 600
DpnI	GATC	4 cut(s)	88, 200, 438, 646
DpnII	GATC	4 cut(s)	86, 198, 436, 644
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	7 cut(s)	67, 109, 307, 418, 595, 839, 862
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	7 cut(s)	63, 105, 303, 414, 591, 835, 858
FauNDI	CATATG	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	7 cut(s)	171, 330, 333, 623, 765, 830, 833
FokI	GGATG	3 cut(s)	139, 574, 647
Fsp4HI	GCNGC	7 cut(s)	171, 330, 333, 623, 765, 830, 833
FspBI	CTAG	3 cut(s)	396, 648, 690
GluI	GCNGC	7 cut(s)	171, 330, 333, 623, 765, 830, 833
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	7 cut(s)	67, 109, 307, 418, 595, 839, 862
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	4 cut(s)	72, 149, 607, 655
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	2 cut(s)	160, 488
Hpy188III	TCNNGA	4 cut(s)	76, 206, 648, 755
Hpy8I	GTNNAC	1 cut(s)	546
HpyAV	CCTTC	3 cut(s)	208, 367, 424
HpyCH4III	ACNGT	5 cut(s)	97, 254, 543, 701, 751
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	7 cut(s)	136, 257, 303, 335, 523, 578, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	15, 600
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	7 cut(s)	67, 109, 307, 418, 595, 839, 862
Kzo9I	GATC	4 cut(s)	86, 198, 436, 644
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	5 cut(s)	157, 316, 319, 776, 816
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	396, 648, 690
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	4 cut(s)	88, 200, 438, 646
MboI	GATC	4 cut(s)	86, 198, 436, 644
MboII	GAAGA	6 cut(s)	151, 208, 230, 333, 572, 654
MflI	RGATCY	3 cut(s)	86, 436, 644
MluCI	AATT	5 cut(s)	209, 225, 385, 418, 615
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	4 cut(s)	78, 166, 286, 733
Mph1103I	ATGCAT	1 cut(s)	305
MroXI	GAANNNNTTC	2 cut(s)	225, 800
MseI	TTAA	6 cut(s)	54, 164, 537, 618, 660, 726
MslI	CAYNNNNRTG	2 cut(s)	590, 840
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	4 cut(s)	86, 198, 436, 644
NlaIII	CATG	7 cut(s)	67, 109, 307, 418, 595, 839, 862
NlaIV	GGNNCC	2 cut(s)	759, 803
NmuCI	GTSAC	1 cut(s)	515
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	109, 839
PaeI	GCATGC	1 cut(s)	839
PasI	CCCWGGG	1 cut(s)	231
PdmI	GAANNNNTTC	2 cut(s)	225, 800
PfeI	GAWTC	4 cut(s)	72, 149, 607, 655
PkrI	GCNGC	7 cut(s)	172, 331, 334, 624, 766, 831, 834
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	759, 803
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	2 cut(s)	337, 766
PsuI	RGATCY	3 cut(s)	86, 436, 644
RsaI	GTAC	3 cut(s)	41, 400, 814
RsaNI	GTAC	3 cut(s)	40, 399, 813
RseI	CAYNNNNRTG	2 cut(s)	590, 840
SaqAI	TTAA	6 cut(s)	54, 164, 537, 618, 660, 726
SatI	GCNGC	7 cut(s)	171, 330, 333, 623, 765, 830, 833
Sau3AI	GATC	4 cut(s)	86, 198, 436, 644
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	2 cut(s)	333, 762
SmiMI	CAYNNNNRTG	2 cut(s)	590, 840
SphI	GCATGC	1 cut(s)	839
Sse9I	AATT	5 cut(s)	209, 225, 385, 418, 615
SsiI	CCGC	2 cut(s)	622, 833
SspMI	CTAG	3 cut(s)	396, 648, 690
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	5 cut(s)	97, 254, 543, 701, 751
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	209, 225, 385, 418, 615
TatI	WGTACW	2 cut(s)	39, 398
TauI	GCSGC	2 cut(s)	625, 835
TfiI	GAWTC	4 cut(s)	72, 149, 607, 655
Tru1I	TTAA	6 cut(s)	54, 164, 537, 618, 660, 726
Tru9I	TTAA	6 cut(s)	54, 164, 537, 618, 660, 726
TscAI	CASTG	2 cut(s)	259, 706
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	5 cut(s)	170, 329, 332, 764, 829
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	8 cut(s)	52, 63, 192, 261, 320, 431, 566, 809
TspRI	CASTG	2 cut(s)	259, 706
XbaI	TCTAGA	1 cut(s)	647
XceI	RCATGY	2 cut(s)	109, 839
XmiI	GTMKAC	1 cut(s)	545
XmnI	GAANNNNTTC	2 cut(s)	225, 800
XspI	CTAG	3 cut(s)	396, 648, 690
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.